YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27435796
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVTAPSCPL DSRSPSWGST WLCASGGSWG TASSCMSSSA GRALRGTGDS RHTKMKTATN  60
   61 IYIFNLALAD TLVLLTLPFQ GTDILLGFWP FGNALCKTVI AIDYYNMFTS TFTLTAMSVD 120
  121 RYVAICHPIR ALDVRTSSKA QAVNVAIWAL ASVVGVPVAI MGSAQVEDEE IECLVEIPAP 180
  181 QDYWGPVFAI CIFLFSFIIP VLIISVCYSL MIRRLRGVRL LSGSREKDRN LRRITRLVLV 240
  241 VVAVFVGCWT PVQVFVLVQG LGVQPGSETA VAILRFCTAL GYVNSCLNPI LYAFLDENFK 300
  301 ACFRKFCCAS SLHREMQVSD RVRSIAKDVG LGCKTSETVP RPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.76
Transmembrane Helix	18	40	0.69
Cytoplasmic	41	60	0.88
Transmembrane Helix	61	81	0.92
Non-Cytoplasmic	82	100	0.80
Transmembrane Helix	101	124	0.70
Cytoplasmic	125	141	0.87
Transmembrane Helix	142	161	0.91
Non-Cytoplasmic	162	186	0.89
Transmembrane Helix	187	212	0.90
Cytoplasmic	213	233	0.96
Transmembrane Helix	234	255	0.92
Non-Cytoplasmic	256	271	0.84
Transmembrane Helix	272	295	0.71
Cytoplasmic	296	343	0.79