YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23463297, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVSWSLGT AILPQTLAIL WGHKPLCLPM FSLPTLGPHT HRPLSSPLPM VNQGIPMVPV  60
   61 PITRWLPLKD LLKEATHQGH YPQSPFPPNP YGQPPPFQDP GSPQHGNYQE EGPPSYYDNQ 120
  121 DFPSVNWDKS IRQAFIRKVF LVLTLQLSVT LSTVAIFTFV GEVKGFVRAN VWTYYVSYAI 180
  181 FFISLIVLSC CGDFRKKHPW NLVALSILTI SLSYMVGMIA SFYNTEAVIM AVGITTAVCF 240
  241 TVVIFSMQTR YDFTSCMGVL LVSVVVLFIF AILCIFIRNR ILEIVYASLG ALLFTCFLAV 300
  301 DTQLLLGNKQ LSLSPEEYVF AALNLYTDII NIFLYILTII GRSQGIGQAP AQVAWWAQTH 360
  361 APAMTLPSVL PPLWFPAMAW SRGSPSRPRV CTLQILNVRT LSATAWKPLS LLPLPRGDRA 420
  421 AFLCHLLSTH CCMSPVCQPI PGSGINTRSQ GRRIIPRGEG ARLPSCPSSP GIESPCPLLT 480
  481 LPSEGLAGWG LVLVLGPETK RGWHVSGERL SCVLPL

Type	Start	End	Confidence
Cytoplasmic	1	138	0.78
Transmembrane Helix	139	160	0.93
Non-Cytoplasmic	161	170	0.87
Transmembrane Helix	171	192	0.91
Cytoplasmic	193	199	0.84
Transmembrane Helix	200	220	0.93
Non-Cytoplasmic	221	226	0.75
Transmembrane Helix	227	247	0.93
Cytoplasmic	248	255	0.79
Transmembrane Helix	256	277	0.94
Non-Cytoplasmic	278	283	0.83
Transmembrane Helix	284	306	0.91
Cytoplasmic	307	317	0.90
Transmembrane Helix	318	340	0.86
Non-Cytoplasmic	341	358	0.81
Transmembrane Helix	359	380	0.85
Cytoplasmic	381	516	0.83