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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ROBO1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWKHLPLLV MISLLTLSKK HLLLAQLIPD PEDLERGNDN GTPAPTSDND DNSLGYTGSR  60
   61 LRQEDFPPRI VEHPSDLIVS KGEPATLNCK AEGRPTPTIE WYKGGERVET DKDDPRSHRM 120
  121 LLPSGSLFFL RIVHGRKSRP DEGVYICVAR NYLGEAVSHN ASLEVAILRD DFRQNPSDVM 180
  181 VAVGEPAVME CQPPRGHPEP TISWKKDGSP LDDKDERITI RGGKLMITYT RKSDAGKYVC 240
  241 VGTNMVGERE SKVADVTVLE RPSFVKRPSN LAVTVDDSAE FKCEARGDPV PTFGWRKDDG 300
  301 ELPKSRYEIR DDHTLKIRKV TAGDMGSYTC VAENMVGKAE ASATLTVQEP PHFVVKPRDQ 360
  361 VVALGRTVTF QCEATGNPQP AIFWRREGSQ NLLFSYQPPQ SSSRFSVSQT GDLTVTNVQR 420
  421 SDVGYYICQT LNVAGSIITK AYLEVTDVIA DRPPPVIRQG PVNQTVAVDG TLTLSCVATG 480
  481 SPVPTILWRK DGVLVSTQDS RIKQLESGVL QIRYAKLGDT GRYTCTASTP SGEATWSAYI 540
  541 EVQEFGVPVQ PPRPTDPNLI PSAPSKPEVT DVSKNTVTLL WQPNLNSGAT PTSYIIEAFS 600
  601 HASGSSWQTV AENVKTETFA IKGLKPNAIY LFLVRAANAY GISDPSQISD PVKTQDVPPT 660
  661 TQGVDHKQVQ RELGNVVLHL HNPTILSSSS VEVHWTVDQQ SQYIQGYKIL YRPSGASHGE 720
  721 SEWLVFEVRT PTKNSVVIPD LRKGVNYEIK ARPFFNEFQG ADSEIKFAKT LEERPSAPPR 780
  781 SVTVSKNDGN GTAILVTWQP PPEDTQNGMV QEYKVWCLGN ETRYHINKTV DGSTFSVVIP 840
  841 FLVPGIRYSV EVAASTGAGP GVKSEPQFIQ LDSHGNPVSP EDQVSLAQQI SDVVKQPAFI 900
  901 AGIGAACWII LMVFSIWLYR HRKKRNGLSS TYAGIRKVPS FTFTPTVTYQ RGGEAVSSGG 960
  961 RPGLLNISEP ATQPWLADTW PNTGNSHNDC SINCCTASNG NSDSNLTTYS RPADCIANYN1020
 1021 NQLDNKQTNL MLPESTVYGD VDLSNKINEM KTFNSPNLKD GRFVNPSGQP TPYATTQLIQ1080
 1081 ANLINNMNNG GGDSSEKHWK PPGQQKQEVA PIQYNIMEQN KLNKDYRAND TILPTIPYNH1140
 1141 SYDQNTGGSY NSSDRGSSTS GSQGHKKGAR TPKAPKQGGM NWADLLPPPP AHPPPHSNSE1200
 1201 EYSMSVDESY DQEMPCPVPP ARMYLQQDEL EEEEAERGPT PPVRGAASSP AAVSYSHQST1260
 1261 ATLTPSPQEE LQPMLQDCPE DLGHMPHPPD RRRQPVSPPP PPRPISPPHT YGYISGPLVS1320
 1321 DMDTDAPEEE EDEADMEVAK MQTRRLLLRG LEQTPASSVG DLESSVTGSM INGWGSASEE1380
 1381 DNISSGRSSV SSSDGSFFTD ADFAQAVAAA AEYAGLKVAR RQMQDAAGRR HFHASQCPRP1440
 1441 TSPVSTDSNM SAAVIQKARP TKKQKHQPGH LRREAYTDDL PPPPVPPPAI KSPSVQSKAQ1500
 1501 LEARPIMGPK LASIEARADR SSDRKGGSYK GREALDGRQV TDLRTSPGDP REAQEQPNEG1560
 1561 KARGTKTAKR DLPPAKTHLI PEDILPYCRP TFPTSNNPRD PSSSSSMSSR GSGSRQREQA1620
 1621 NVGRRNMAEM QVLGGFERGD ENNEELEETE S

YRC Informatics Platform - Version 3.0
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