YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|155369743, gi...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWIRLFSGS GISFRIMAHV RHFRTLLSGF YFWEAALLLS LVATKETNSA RSRSAPMSPS  60
   61 DFLDKLMGRT SGYDARIRPN FKGPPVNVTC NIFINSFGSI AETTMDYRVN IFLRQKWNDP 120
  121 RLAYSEYPDD SLDLDPSMLD SIWKPDLFFA NEKGANFHEV TTDNKLLRIF KNGNVLYSIR 180
  181 LTLTLSCPMD LKNFPMDVQT CIMQLESFGY TMNDLIFEWQ DEAPVQVAEG LTLPQFLLKE 240
  241 EKDLRYCTKH YNTGKFTCIE VRFHLERQMG YYLIQMYIPS LLIVILSWVS FWINMDAAPA 300
  301 RVALGITTVL TMTTQSSGSR ASLPKVSYVK AIDIWMAVCL LFVFSALLEY AAVNFVSRQH 360
  361 KELLRFRRKR KNKTEAFALE KFYRFSDTDD EVRESRFSFT AYGMGPCLQA KDGVVPKGPN 420
  421 HAVQVMPKSA DEMRKVFIDR AKKIDTISRA CFPLAFLIFN IFYWVIYKIL RHEDIHHQQD 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	20	0.58
Transmembrane Helix	21	43	0.67
Non-Cytoplasmic	44	270	0.60
Transmembrane Helix	271	292	0.92
Cytoplasmic	293	299	0.49
Transmembrane Helix	300	318	0.62
Non-Cytoplasmic	319	333	0.70
Transmembrane Helix	334	356	0.89
Cytoplasmic	357	446	0.86
Transmembrane Helix	447	467	0.82
Non-Cytoplasmic	468	480	0.84