YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SHAN3_RAT, SHK3_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLNRAAVAA AAAPAEPPEP LSPALAPAPA PPGPLPRSAV GGTLAGGQGG PGRRAESPCA  60
   61 PLSAGNSQGP GASTGMDGPG ASAVVVRVGI PDLQQTKCLR LDPTAPVWAA KQRVLCALNH 120
  121 SLQDALNYGL FQPPSRGRAG KFLDEERLLQ DYPPNLDTPL PYLEFRYKRR VYAQNLIDDK 180
  181 QFAKLHTKAN LKKFMDYVQL HSTDKVARLL DKGLDPNFHD PDSGECPLSL AAQLDNATDL 240
  241 LKVLRNGGAH LDFRTRDGLT AVHCATRQRN AGALTTLLDL GASPDYKDSR GLTPLYHSAL 300
  301 GGGDALCCEL LLHDHAQLGT TDENGWQEIH QACRFGHVQH LEHLLFYGAN MGAQNASGNT 360
  361 ALHICALYNQ ESCARVLLFR GANKDVRNYN SQTAFQVAII AGNFELAEVI KTHKDSDVVP 420
  421 FRETPSYAKR RRLAGPSGLA SPRPLQRSAS DINLKGDQPA ASPGPTLRSL PHQLLLQRLQ 480
  481 EEKDRDRDGE QENDISGPSA GRGGHSKISP SGPGGSGPAP GPGPASPAPP APPPRGPKRK 540
  541 LYSAVPGRKF IAVKAHSPQG EGEIPLHRGE AVKVLSIGEG GFWEGTVKGR TGWFPADCVE 600
  601 EVQMRQYDTR HETREDRTKR LFRHYTVGSY DSLTSHSDYV IDDKVAILQK RDHEGFGFVL 660
  661 RGAKAETPIE EFTPTPAFPA LQYLESVDVE GVAWKAGLRT GDFLIEVNGV NVVKVGHKQV 720
  721 VGLIRQGGNR LVMKVVSVTR KPEEDSARRR APPPPKRAPS TTLTLRSKSM TAELEELASI 780
  781 RRRKGEKLDE ILAVAAEPTL RPDIADADSR AATVKQRPTS RRITPAEISS LFERQGLPGP 840
  841 EKLPGSLRKG IPRTKSVGED EKLASLLEGR FPRSTSMQDT VREGRGIPPP PQTAPPPPPA 900
  901 PYYFDSGPPP TFSPPPPPPG RAYDTVRSSF KPGLEARLGA GAAGLYDSGT PLGPLPYPER 960
  961 QKRARSMIIL QDSAPEVGDV PRPAPAATPP ERPKRRPRPS GPDSPYANLG AFSASLFAPS1020
 1021 KPQRRKSPLV KQLQVEDAQE RAALAVGSPG PVGGSFAREP SPTHRGPRPG GLDYSSGEGL1080
 1081 GLTFGGPSPG PVKERRLEER RRSTVFLSVG AIEGSPPSAD LPSLQPSRSI DERLLGTGAT1140
 1141 TGRDLLLPSP VSALKPLVGG PSLGPSGSTF IHPLTGKPLD PSSPLALALA ARERALASQT1200
 1201 PSRSPTPVHS PDADRPGPLF VDVQTRDSER GPLASPAFSP RSPAWIPVPA RREAEKPTRE1260
 1261 ERKSPEDKKS MILSVLDTSL QRPAGLIVVH ATSNGQEPNR LGAEEERPGT PELAPTPMQA1320
 1321 AAVAEPMPSP RAQPPGSIPA DPGPGQGSSE EEPELVFAVN LPPAQLSSSD EETREELARI1380
 1381 GLVPPPEEFA NGILLATPPP GPGPLPTTVP SPASGKPSSE LPPAPESAAD SGVEEADTRS1440
 1441 SSDPHLETTS TISTVSSMST LSSESGELTD THTSFADGHT FLLEKPPVPP KPKLKSPLGK1500
 1501 GPVTFRDPLL KQSSDSELMA QQHHATSTGL TSAAGPARPR YLFQRRSKLW GDPVESRGLP1560
 1561 GPEDDKPTVI SELSSRLQQL NKDTRSLGEE PVGGLGSLLD PAKKSPIAAA RCAVVPSAGW1620
 1621 LFSSLGELST ISAQRSPGGP GGGASYSVRP SGRYPVARRA PSPVKPASLE RVEGLGAGVG1680
 1681 GAGRPFGLTP PTILKSSSLS IPHEPKEVRF VVRSVSARSR SPSPSPLPSP SPGSGPSAGP1740
 1741 RRPFQQKPLQ LWSKFDVGDW LESIHLGEHR DRFEDHEIEG AHLPALTKED FVELGVTRVG1800
 1801 HRMNIERALR QLDGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle