YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DRD1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNTSTMDE AGLPAERDFS FRILTACFLS LLILSTLLGN TLVCAAVIRF RHLRSKVTNF  60
   61 FVISLAVSDL LVAVLVMPWK AVAEIAGFWP LGPFCNIWVA FDIMCSTASI LNLCVISVDR 120
  121 YWAISSPFQY ERKMTPKAAF ILISVAWTLS VLISFIPVQL SWHKAKPTWP LDGNFTSLED 180
  181 TEDDNCDTRL SRTYAISSSL ISFYIPVAIM IVTYTSIYRI AQKQIRRISA LERAAVHAKN 240
  241 CQTTAGNGNP VECAQSESSF KMSFKRETKV LKTLSVIMGV FVCCWLPFFI SNCMVPFCGS 300
  301 EETQPFCIDS ITFDVFVWFG WANSSLNPII YAFNADFQKA FSTLLGCYRL CPTTNNAIET 360
  361 VSINNNGAVV FSSHHEPRGS ISKDCNLVYL IPHAVGSSED LKKEEAGGIA KPLEKLSPAL 420
  421 SVILDYDTDV SLEKIQPVTH SGQHST

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.97
Transmembrane Helix	21	44	0.87
Cytoplasmic	45	56	0.79
Transmembrane Helix	57	79	0.90
Non-Cytoplasmic	80	96	0.87
Transmembrane Helix	97	118	0.92
Cytoplasmic	119	137	0.90
Transmembrane Helix	138	160	0.92
Non-Cytoplasmic	161	199	0.94
Transmembrane Helix	200	218	0.96
Cytoplasmic	219	269	0.97
Transmembrane Helix	270	290	0.93
Non-Cytoplasmic	291	314	0.86
Transmembrane Helix	315	335	0.45
Cytoplasmic	336	446	0.55