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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CUBN_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQFLWGFV TLLMIAELDG KTGKPEQRGQ KRIADLHQPR MTTEEGNLVF LTSSTQNIEF  60
   61 RTGSLGKIKL NDEDLGECLH QIQRNKDDII DLRKNTTGLP QNILSQVHQL NSKLVDLERD 120
  121 FQNLQQNVER KVCSSNPCLN GGTCVNLHDS FVCICPSQWK GLFCSEDVNE CVVYSGTPFG 180
  181 CQSGSTCVNT VGSFRCDCTP DTYGPQCASK YNDCEQGSKQ LCKHGICEDL QRVHHGQPNF 240
  241 HCICDAGWTT PPNGISCTED KDECSLQPSP CSEHAQCFNT QGSFYCGACP KGWQGNGYEC 300
  301 QDINECEINN GGCSQAPLVP CLNTPGSFSC GNCPAGFSGD GRVCTPVDIC SIHNGGCHPE 360
  361 ATCSSSPVLG SFLPVCTCPP GYTGNGYGSN GCVRLSNICS RHPCVNGQCI ETVSSYFCKC 420
  421 DSGWSGQNCT ENINDCSSNP CLNGGTCIDG INGFTCDCTS SWTGYYCQTP QAACGGILSG 480
  481 TQGTFAYHSP NDTYIHNVNC FWIVRTDEEK VLHVTFTFFD LESASNCPRE YLQIHDGDSS 540
  541 ADFPLGRYCG SRPPQGIHSS ANALYFHLYS EYIRSGRGFT ARWEAKLPEC GGILTDNYGS 600
  601 ITSPGYPGNY PPGRDCVWQV LVNPNSLITF TFGTLSLESH NDCSKDYLEI RDGPFHQDPV 660
  661 LGKFCTSLST PPLKTTGPAA RIHFHSDSET SDKGFHITYL TTQSDLDCGG NYTDTDGELL 720
  721 LPPLSGPFSH SRQCVYLITQ AQGEQIVINF THVELESQMG CSHTYIEVGD HDSLLRKICG 780
  781 NETLFPIRSV SNKVWIRLRI DALVQKASFR ADYQVACGGM LRGEGFFRSP FYPNAYPGRR 840
  841 TCRWTISQPQ RQVVLLNFTD FQIGSSASCD TDYIEIGPSS VLGSPGNEKF CSSNIPSFIT 900
  901 SVYNILYVTF VKSSSMENRG FTAKFSSDKL ECGEVLTAST GIIESPGHPN VYPRGVNCTW 960
  961 HVVVQRGQLI RLEFSSFYLE FHYNCTNDYL EIYDTAAQTF LGRYCGKSIP PSLTSNSNSI1020
 1021 KLIFVSDSAL AHEGFSINYE AIDASSVCLY DYTDNFGMLS SPNFPNNYPS NWECIYRITV1080
 1081 GLNQQIALHF TDFTLEDYFG SQCVDFVEIR DGGYETSPLV GIYCGSVLPP TIISHSNKLW1140
 1141 LKFKSDAALT AKGFSAYWDG SSTGCGGNLT TPTGVLTSPN YPMPYYHSSE CYWRLEASHG1200
 1201 SPFELEFQDF HLEHHPSCSL DYLAVFDGPT TNSRLIDKLC GDTTPAPIRS NKDVVLLKLR1260
 1261 TDAGQQGRGF EINFRQRCDN VVIVNKTSGI LESINYPNPY DKNQRCNWTI QATTGNTVNY1320
 1321 TFLGFDVESY MNCSTDYVEL YDGPQWMGRY CGNNMPPPGA TTGSQLHVLF HTDGINSGEK1380
 1381 GFKMQWFTHG CGGEMSGTAG SFSSPGYPNS YPHNKECIWN IRVAPGSSIQ LTIHDFDVEY1440
 1441 HTSCNYDSLE IYAGLDFNSP RIAQLCSQSP SANPMQVSST GNELAIRFKT DSTLNGRGFN1500
 1501 ASWRAVPGGC GGIIQLSRGE IHSPNYPNNY RANTECSWII QVERHHRVLL NITDFDLEAP1560
 1561 DSCLRLMDGS SSTNARVASV CGRQQPPNSI IASGNSLFVR FRSGSSSQNR GFRAEFREEC1620
 1621 GGRIMTDSSD TIFSPLYPHN YLHNQNCSWI IEAQPPFNHI TLSFTHFQLQ NSTDCTRDFV1680
 1681 EILDGNDYDA PVQGRYCGFS LPHPIISFGN ALTVRFVTDS TRSFEGFRAI YSASTSSCGG1740
 1741 SFYTLDGIFN SPDYPADYHP NAECVWNIAS SPGNRLQLSF LSFNLENSLN CNKDFVEIRE1800
 1801 GNATGHLIGR YCGNSLPGNY SSAEGHSLWV RFVSDGSGTG MGFQARFKNI FGNNNIVGTH1860
 1861 GKIASPFWPG KYPYNSNYKW VVNVDAYHII HGRILEMDIE PTTNCFYDSL KIYDGFDTHS1920
 1921 RLIGTYCGTQ TESFSSSRNS LTFQFSSDSS VSGRGFLLEW FAVDVSDSTP PTIAPGACGG1980
 1981 FMVTGDTPVH IFSPGWPREY ANGADCIWII YAPDSTVELN ILSLDIEPQQ SCNYDKLIVK2040
 2041 DGDSDLSPEL AVLCGVSPPG PIRSTGEYMY IRFTSDTSVA GTGFNASFHK SCGGYLHADR2100
 2101 GVITSPKYPD TYLPNLNCSW HVLVQTGLTI AVHFEQPFQI QNRDSFCSQG DYLVLRNGPD2160
 2161 NHSPPLGPSG RNGRFCGMYA PSTLFTSGNE MFVQFISDSS NGGQGFKIRY EAKSLACGGT2220
 2221 VYIHDADSDG YLTSPNYPAN YPQHAECIWI LEAPPGRSIQ LQFEDQFNIE DTPNCSVSYL2280
 2281 ELRDGANSNA RLVSKLCGHT LPHSWVSSRE RIYLKFHTDG GSSYMGFKAK YSIASCGGTV2340
 2341 SGDSGVIESI GYPTLPYANN VFCQWFIRGL PGHYLTLSFE DFNLQSSPGC TKDFVEIWEN2400
 2401 HTSGRVLGRY CGNSTPSSVD TSSNVASVKF VTDGSVTASG FRLQFKSSRQ VCGGDLHGPT2460
 2461 GTFTSPNYPN PNPHARICEW TITVQEGRRI VLTFTNLRLS TQPSCNSEHL IVFNGIRSNS2520
 2521 PLLQKLCSRV NVTNEFKSSG NTMKVVFFTD GSRPYGGFTA SYTSTEDAVC GGFLPSVSGG2580
 2581 NFSSPGYNGI RDYARNLDCE WTLSNPNREN SSISIYFLEL SIESHQDCTF DVLEFRVGDA2640
 2641 DGPLIEKFCS LSAPTAPLVI PYPQVWIHFV SNERVEYTGF YIEYSFTDCG GIRTGDNGVI2700
 2701 SSPNYPNLYS AWTHCSWLLK APEGHTITLT FSDFLLEAHP TCTSDSVTVR NGDSPGSPVI2760
 2761 GRYCGQSVPR PIQSGSNQLI VTFNTNNQGQ TRGFYATWTT NALGCGGTFH SANGTIKSPH2820
 2821 WPQTFPENSR CSWTVITHES KHWEISFDSN FRIPSSDSQC QNSFVKVWEG RLMINKTLLA2880
 2881 TSCGDVAPSP IVTSGNIFTA VFQSEEMAAQ GFSASFISRC GRTFNTSPGD IISPNFPKQY2940
 2941 DNNMNCTYLI DADPQSLVIL TFVSFHLEDR SAITGTCDHD GLHIIKGRNL SSTPLVTICG3000
 3001 SETLRPLTVD GPVLLNFYSD AYTTDFGFKI SYRAITCGGI YNESSGILRS PSYSYSNYPN3060
 3061 NLYCVYSLHV RSSRVIIIRF NDFDVAPSNL CAHDFLEVFD GPSIGNRSLG KFCGSTRPQT3120
 3121 VKSTNSSLTL LFKTDSSQTA RGWKIFFRET IGPQQGCGGY LTEDNQSFVS PDSDSNGRYD3180
 3181 KGLSCIWYIV APENKLVKLT FNVFTLEGPS SAGSCVYDYV QIADGASINS YLGGKFCGSR3240
 3241 MPAPFISSGN FLTFQFVSDV TVEMRGFNAT YTFVDMPCGG TYNATSTPQN ASSPHLSNIG3300
 3301 RPYSTCTWVI AAPPQQQVQI TVWDLQLPSQ DCSQSYLELQ DSVQTGGNRV TQFCGANYTT3360
 3361 LPVFYSSMST AVVVFKSGVL NRNSQVQFSY QIADCNREYN QTFGNLKSPG WPQNYDNNLD3420
 3421 CTIILRAPQN HSISLFFYWF QLEDSRQCMN DFLEVRNGGS STSPLLDKYC SNLLPNPVFS3480
 3481 QSNELYLHFH SDHSVTNNGY EIIWTSSAAG CGGTLLGDEG IFTNPGFPDS YPNNTHCEWT3540
 3541 IVAPSGRPVS VGFPFLSIDS SGGCDQNYLI VFNGPDANSP PFGPLCGINT GIAPFYASSN3600
 3601 RVFIRFHAEY TTRLSGFEIM WSS

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