YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO1A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.72
Transmembrane Helix	21	40	0.72
Non-Cytoplasmic	41	54	0.59
Transmembrane Helix	55	79	0.86
Cytoplasmic	80	86	0.63
Transmembrane Helix	87	109	0.92
Non-Cytoplasmic	110	203	0.61
Transmembrane Helix	204	225	0.84
Cytoplasmic	226	241	0.54
Transmembrane Helix	242	266	0.89
Non-Cytoplasmic	267	353	0.59
Transmembrane Helix	354	375	0.80
Cytoplasmic	376	385	0.69
Transmembrane Helix	386	409	0.72
Non-Cytoplasmic	410	512	0.87
Transmembrane Helix	513	536	0.87
Cytoplasmic	537	546	0.79
Transmembrane Helix	547	570	0.84
Non-Cytoplasmic	571	600	0.86
Transmembrane Helix	601	623	0.78
Cytoplasmic	624	670	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDLEKGAAT HGAGCFAKIK VFLMALTCAY VSKSLSGTFM SSMLTQIERQ FGIPTAIVGF  60
   61 INGSFEIGNL LLIIFVSYFG MKLHRPIVIG VGCAVMGLGC FIISLPHFLM GRYEYETTIL 120
  121 PTSNLSSNSF LCMENQTQTL NPAQDPAECV KEVKSLMWIY VLVGNIIRGI GETPIMPLGV 180
  181 SYIENFAKSE NSPLYIGILE TGKMIGPIFG LLLGSFCASI YVDTGSVNTD DLTITPTDIR 240
  241 WVGAWWIGFL VCAGVNILIS IPFFFFPKTL PKEGLQENVD GTENAKEEST EKRPRKKNRG 300
  301 ITKDFFPFLK SPVLQPDLHA VHPYKVLQVN AFNIYFSFLP KYLENQYGKS TAEVIFLMGV 360
  361 YNLPAICIGY LIAGFMMKKF KITVKTAAFL AFCLSLSEYS FGFCNFLITC DNVPVAGLTN 420
  421 SYERDQKPLY LENNVLADCN TRCSCLTKTW DPVCGDNGLA YMSACLAGCE KSVGTGTNMV 480
  481 FHNCSCIQSP GNSSAVLGLC NKGPECTNKL QYLLILSGFL SILYSFAAIP GYMVFLRCIK 540
  541 SEEKSLGIGI HAFCIRVFAG IPAPIYFGAL IDRTCLHWGT QKCGAPGACR MYDINSFRRI 600
  601 YLGMSAALRG SSYLPAFVIV ILTRKFSLPG KINSSEMEIA EMKLTEKESQ CTDVHRNPKF 660
  661 KNDGELKTKL