YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PF2R_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSINSSKQPA SSAAGLIANT TCQTENRLSV FFSIIFMTVG IVSNSLAIAI LMKAYQRFRR  60
   61 KSKASFLLLA SGLVITDFFG HLINGGIAVF VYASDKDWIR FDQSNILCSV FGISMVFSGL 120
  121 CPLFLGSTMA IERCIGVTNP LFHSTKITSK HVKMILSGVC MFAVFVALLP ILGHRDYQIQ 180
  181 ASRTWCFYNT EHIEDWEDRF YLLFFSSLGL LALGISFSCN AVTGVTLLRV KFRSQQHRQG 240
  241 RSHHLEMVIQ LLAIMCVSCV CWSPFLVTMA NIAINGNNSP VTCETTLFAL RMATWNQILD 300
  301 PWVYILLRKA VLRNLYKLAS RCCGVNIISL HIWELSSIKN SLKVAAISES PAAEKENQQA 360
  361 SSEAGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.93
Transmembrane Helix	30	52	0.89
Cytoplasmic	53	65	0.83
Transmembrane Helix	66	88	0.87
Non-Cytoplasmic	89	105	0.88
Transmembrane Helix	106	131	0.83
Cytoplasmic	132	151	0.94
Transmembrane Helix	152	172	0.94
Non-Cytoplasmic	173	205	0.92
Transmembrane Helix	206	228	0.91
Cytoplasmic	229	247	0.91
Transmembrane Helix	248	270	0.90
Non-Cytoplasmic	271	366	0.55