YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO3A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.95
Transmembrane Helix	39	61	0.85
Non-Cytoplasmic	62	77	0.88
Transmembrane Helix	78	99	0.92
Cytoplasmic	100	107	0.82
Transmembrane Helix	108	128	0.92
Non-Cytoplasmic	129	179	0.93
Transmembrane Helix	180	199	0.91
Cytoplasmic	200	212	0.85
Transmembrane Helix	213	235	0.92
Non-Cytoplasmic	236	260	0.92
Transmembrane Helix	261	285	0.88
Cytoplasmic	286	349	0.97
Transmembrane Helix	350	372	0.92
Non-Cytoplasmic	373	389	0.92
Transmembrane Helix	390	410	0.94
Cytoplasmic	411	420	0.83
Transmembrane Helix	421	442	0.85
Non-Cytoplasmic	443	534	0.95
Transmembrane Helix	535	560	0.84
Cytoplasmic	561	571	0.85
Transmembrane Helix	572	597	0.82
Non-Cytoplasmic	598	624	0.92
Transmembrane Helix	625	645	0.91
Cytoplasmic	646	710	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGKKPGGSS GGGRSGELQG DEAQRNKKKK KKVSCFSNIK IFLVSECALM LAQGTVGAYL  60
   61 VSVLTTLERR FNLQSADVGV IASSFEIGNL ALILFVSYFG ARGHRPRLIG CGGIVMALGA 120
  121 LLSALPEFLT HQYKYEAGEI RWGAEGRDVC ATNGSSSDEG PDPDLICRNR TATNMMYLLL 180
  181 IGAQVLLGIG ATPVQPLGVS YIDDHVRRKD SSLYIGILFT MLVFGPACGF ILGSFCTKIY 240
  241 VDAVFIDTSN LDITPDDPRW IGAWWGGFLL CGALLFFSSL LMFGFPQSLP PHSEPGMESE 300
  301 QAMLPEREYE RPKPSNGVLR HPLEPDSSAS CFQQLRVIPK VTKHLLSNPV FTCIVLAACM 360
  361 EIAVVAGFAA FLGKYLEQQF NLTTSSANQL LGMTAIPCAC LGIFLGGLLV KKLSLSALGA 420
  421 IRMAMLVNLV STACYVSFLF LGCDTVPVAG VTVRYGNNSA RGSPLDPYSP CNNNCECQTD 480
  481 SFTPVCGADG ITYLSACFAG CNSTNLTGCA CLTTVPPENA TVVPGKCPSP GCQEAFLTFL 540
  541 CVMCVCSLIG AMAQTPSVII LIRTVSPELK SYALGVLFLL LRLLGFIPPP LIFGAGIDST 600
  601 CLFWSTFCGE QGACVLYDNV VYRYLYVSIA IALKSFAFIL YTTTWQCLRK NYKRYIKNHE 660
  661 GGLSTSEFLA STLTLDNLGR DPVPAHQTHR TKFIYNLEDH EWCENMESVL