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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MUC4_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGPHGVSWR VPWLCLSCLC SCLLLLPVNT STTSAPKTST ALPSSTNPSQ MTSQVSNPTA  60
   61 SSYRMTKNTG QASPMVTSSS ITTLPQSQHT GSMKTTRNPQ TTGTTEVTTT LSASSSDQVQ 120
  121 VETTSQTTLS PDTTTTSHAP RESSSPPSTS VILTTTASTE GTSGDTGHTM AVTTQGSTPA 180
  181 TTEISVTPST QKMSPVSTFS TSTQEITTLS QSQHTGGMKT TRNPQTTGTT EVTTTLSASS 240
  241 SDHPTSSPES TPGNTAPRTT ETSTTTTTKV LMTSLQQKLP TGSTLGTSTQ ELTTLPQSQH 300
  301 TGIMKTTSRT QTTTPTEVTT RTLSASSSDH RQAETSSQTT LSPDTTTTSH APRESSPPST 360
  361 SVILTHGHRE GTSGDTGHTM AVTTQGSTPA TTEISVTPST QKMSPVSTFS TSTQEITTLS 420
  421 QSQHTGGMKT TRNPQRTTPT EVTTSTLSAS SSDQVQVETT SRATLSPDTT TTSHAPSVSS 480
  481 SSPSPPSTEG TSVDTGLTTA VTTQDSTPAT TQGSLTSSSQ TLSTVSPLST STQETSTQEL 540
  541 TSSQSQHTGS MKTTHNPQTT RNTEVTTTLS ASSSDQVQVE TTSQTTLSDA TTTSHAPRES 600
  601 SSPPSTSDIL TTMASTEGTS GDTGHTMAVT TQGSTPATTE ISVTPSTQKM SPVSTFSTST 660
  661 QEITTLSQSQ HTGGMKTTRN PQTTGTTEVT TTLSASSSDQ VQAETSSQTT LSPDTTTTSH 720
  721 APRESSSPPS TSDMLTTTAS TEGTSGDTGH TTAVTTQGSI PATTQLSTTF ASQKMSTVST 780
  781 PTTSSIQELS TLPQSQHTGS MEISSRPQTT SVTSTLSSSP SGSTPVQTRS VTSSSDERTN 840
  841 PTSSGVSNTS PATTEVLTPT SSPESTPGNT APRTTETSTT TTTKVLMTSL QQKLPTGSTL 900
  901 GTSTPTEVTT TLSASSSDQV QVETTSQTTL SPDATTTSHA PRESSSPPST SVILTTMAST 960
  961 EGTSGDTGHT TAVTDQGSTP ATTEISVTPS TQKMSTVSTL VTSTQELTSS QSQRTGSMGT1020
 1021 SSKPQATTPT EVTTSTLSSF SRGSLFSARN CCLQTKKPPL PAVVCLPDPS SVPSLMHSSK1080
 1081 PQATTPTEVT TSTLSSFSRG STQTQTVSWE TSSSGKITAP STSSRRTPSV ATSDIFTTTD1140
 1141 STSGNAGHTL LTGSHSVITS RVASTTLGRL STVAHRQSTQ RSSTHSQSYL TESMGASSTS1200
 1201 ETSLLTEATT ETSLCLFTWT HCDRDLLSWT SSSGLTTKTD NDRSTALSAT SLTLPAPSTS1260
 1261 TASRSTVPPA PLPPDQGISL FQIGFPLGSL CGIPSILQIT VRSFSPSQTT MSSPTPTHLK1320
 1321 EASQEGSVCH SGHSGVMLIS LAPGEPYFRT TTSHFTMSST SLIRKVESLI NEFTSDWSFK1380
 1381 PSDTEVTWVN VPAYPAQGRT LGANTYQAIL STDGSRSYAL FLYQSGGMRW DVTQGLYNRV1440
 1441 LMGFSSGDGY FENSPLIFRP AVEKYRPDRF LTPNYGSGDS RSTGYTGRCG PTTGSSVCSG1500
 1501 WKVSLSSPAG AGTRFPALAP GSRDFGSGSS TQVCGAGSYA ASLRAGRVLY VWHLGEFREG1560
 1561 WRMHSPWQFD EDEGRHRTGL AAGTTSPLSA SSTSSGGPEL VVLGTRPPRP AWTFGDPHIT1620
 1621 TLDNAKYTFN GLGYFLLVQA QDRNSSFLLE GRTAQTDSAN ATNFIAFAAQ YNTSSLKSPI1680
 1681 TVQWFLEPND TIRVVHNNQT VAFNTSDTED LPVFNATGVL LIQNGSQVSA NFDGTVTISV1740
 1741 IALSNILHAS SSLSEEYRNH TKGLLGVWND NPEDDFRMPN GSTIPSNTSE ETLFHYGMTS1800
 1801 ETNGIGLLGV RTDPLPSEFT PIFLSQLWNK SGAGEDLISG CNEDAQCKFD ILATGNRDIG1860
 1861 QSTNSILRTF RHVNGTLNQY PPPIHYSSKI QAYKGREQWP LRSPATLRMS YSASPTSAVA1920
 1921 FELFENGSLH VDTNIPRRTY LEILARDVKT NLSSVLQPET VACFCSKEEQ CLYNETSKEG1980
 1981 NSSTEVTSCK CDGNSFGRLC EHSKDLCTEP CFPNVDCIPG KGCQACPPNM TGDGRHCVAV2040
 2041 EISEFCQNHS CPVNYCYNHG HCDISGPPDC QPTCTCAPAF TGNRCFLAGN NFTPIIYKEL2100
 2101 PLRTITLSLR EDENASNADV NASVANVLEN LDMRAFLSNS LVELIRTSPG APVLGKPIHH2160
 2161 WKVVSHFKYR PRGPLIHYLN NQLISAVMEA FLLQARQERR KRSGEARKNV RFFPISRADV2220
 2221 QDGMALNLSM LDEYFTCDGY KGYHLVYSPQ DGVTCVSPCS EGYCHNGGQC KHLPDGPQCT2280
 2281 CATFSIYTSW GERCEHLSVK LGAFFGILFG ALGALLLLAI LACVVFHFCG CSMNKFSYPL2340
 2341 DSEL

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