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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: JPH2_RAT
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGRFDFDD GGAYCGGWEG GKAHGHGLCT GPKGQGEYSG SWNFGFEVAG VYTWPSGNTF  60
   61 EGYWSQGKRH GLGIETKGRW LYKGEWTHGF KGRYGIRQST NSGAKYEGTW NNGLQDGYGT 120
  121 ETYADGGTYQ GQFTNGMRHG YGVRQSVPYG MAVVVRSPLR TSLSSLRSEH SNGTVAPDSP 180
  181 AADGPTLPLP PVPRGGFALS LLATAEAARP PGLFTRGALL GRLRRSESRT SLGSQRSRLS 240
  241 FLKSELSSGA SDAASTGSLA EGAEGPDDAA APFDADIDAT TTETYMGEWK NDKRSGFGVS 300
  301 ERSSGLRYEG EWLDNLRHGY GRTTLPDGHR EEGKYRHNVL VKGTKRRVLP LKSNKVRQKV 360
  361 EHGVEGAQRA AAIARQKAEI AASRTSHAKA KAEAAEQAAL AANQESNIAR TLAKELAPDF 420
  421 YQPGPEYQKR RLLQEILENS ESLLEPRERG PGTGLPERPR ESPQLHERET PQPEGGPPSP 480
  481 AGTPPQPKRP RPGSSKDGLL SPGAWNGEPG GEGSRPATPS DGAGRRSPAR PASEHMAIEA 540
  541 LQPPPAPSRE PEVALYRGYH SYAVRTGPPE PPPLEDEPEP EPEVPRSDSE PPSPVSATVQ 600
  601 EEESPAPRSR VPAKPATLEP KPIVPKAEPK AKARKTEARG LSKAGAKKKG RKEVAQEAEA 660
  661 EVEVEEVPNT VLICMVILLN IGLAILFVHL LT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle