YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S38A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.93
Transmembrane Helix	69	89	0.84
Non-Cytoplasmic	90	94	0.65
Transmembrane Helix	95	117	0.88
Cytoplasmic	118	137	0.76
Transmembrane Helix	138	163	0.73
Non-Cytoplasmic	164	182	0.77
Transmembrane Helix	183	205	0.86
Cytoplasmic	206	210	0.65
Transmembrane Helix	211	232	0.90
Non-Cytoplasmic	233	286	0.76
Transmembrane Helix	287	307	0.72
Cytoplasmic	308	323	0.86
Transmembrane Helix	324	345	0.90
Non-Cytoplasmic	346	365	0.91
Transmembrane Helix	366	386	0.95
Cytoplasmic	387	403	0.90
Transmembrane Helix	404	425	0.92
Non-Cytoplasmic	426	430	0.77
Transmembrane Helix	431	453	0.92
Cytoplasmic	454	468	0.90
Transmembrane Helix	469	491	0.93
Non-Cytoplasmic	492	504	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIPRQTEMV ELVPNGKHLE GLLPVGMPTA DTQRAEDAQH CGEGKGFLQQ SSSKEPHFTD  60
   61 FEGKTSFGMS VFNLSNAIMG SGILGLAYAM ANTGIILFLF LLTAVALLSS YSIHLLLKSS 120
  121 GIVGIRAYEQ LGYRAFGTPG KLAAALAITL QNIGAMSSYL YIIKSELPLV IQTFLNLEKP 180
  181 TPVWYMDGNY LVILVSVIII LPLALMRQLG YLGYSSGFSL SCMVFFLIAV IYKKFQVPCP 240
  241 LAHNLVNATG NFSHMVVVEE KSQLQSEPDT AEAFCTPSYF TLNSQTAYTI PIMAFAFVCH 300
  301 PEVLPIYTEL KDPSKRKMQH ISNLSIAVMY VMYFLAALFG YLTFYDGVES ELLHTYSKVD 360
  361 PFDVLILCVR VAVLIAVTLT VPIVLFPVRR AIQQMLFQNQ EFSWLRHVLI ATGLLTCINL 420
  421 LVIFAPNILG IFGIIGATSA PCLIFIFPAI FYFRIMPTEK EPVRSTPKIL ALCFAAVGFL 480
  481 LMTMSLSFII TDWVSGTSQH GGNH