YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRA5_RAT
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNGMLSRFI MTKTLLVFCI SMTLSSHFGF SQMPTSSVQD ETNDNITIFT RILDGLLDGY  60
   61 DNRLRPGLGE RITQVRTDIY VTSFGPVSDT EMEYTIDVFF RQSWKDERLR FKGPMQRLPL 120
  121 NNLLASKIWT PDTFFHNGKK SIAHNMTTPN KLLRLEDDGT LLYTMRLTIS AECPMQLEDF 180
  181 PMDAHACPLK FGSYAYPNSE VVYVWTNGST KSVVVAEDGS RLNQYHLMGQ TVGTENISTS 240
  241 TGEYTIMTAH FHLKRKIGYF VIQTYLPCIM TVILSQVSFW LNRESVPART VFGVTTVLTM 300
  301 TTLSISARNS LPKVAYATAM DWFIAVCYAF VFSALIEFAT VNYFTKRGWA WDGKKALEAA 360
  361 KIKKKERELI LNKSTNAFTT GKLTHPPNIP KEQLPGGTGN AVGTASIRAS EEKTSESKKT 420
  421 YNSISKIDKM SRIVFPILFG TFNLVYWATY LNREPVIKGA TSPK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.67
Transmembrane Helix	9	30	0.64
Non-Cytoplasmic	31	258	0.92
Transmembrane Helix	259	280	0.87
Cytoplasmic	281	287	0.74
Transmembrane Helix	288	307	0.87
Non-Cytoplasmic	308	321	0.71
Transmembrane Helix	322	344	0.88
Cytoplasmic	345	432	0.90
Transmembrane Helix	433	450	0.79
Non-Cytoplasmic	451	464	0.75