YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S20A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.89
Transmembrane Helix	26	45	0.94
Non-Cytoplasmic	46	61	0.80
Transmembrane Helix	62	83	0.69
Cytoplasmic	84	104	0.66
Transmembrane Helix	105	124	0.75
Non-Cytoplasmic	125	165	0.66
Transmembrane Helix	166	189	0.87
Cytoplasmic	190	201	0.88
Transmembrane Helix	202	222	0.92
Non-Cytoplasmic	223	231	0.79
Transmembrane Helix	232	255	0.93
Cytoplasmic	256	514	0.99
Transmembrane Helix	515	534	0.62
Non-Cytoplasmic	535	560	0.63
Transmembrane Helix	561	582	0.89
Cytoplasmic	583	601	0.56
Transmembrane Helix	602	616	0.62
Non-Cytoplasmic	617	617	0.25
Transmembrane Helix	618	632	0.40
Cytoplasmic	633	651	0.57
Transmembrane Helix	652	674	0.91
Non-Cytoplasmic	675	681	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTLAPITS TLAAVTASAP PKYDNLWMLI LGFIIAFVLA FSVGANDVAN SFGTAVGSGV  60
   61 VTLKQACILA SIFETVGSAL LGAKVSETIR KGLIDVEKYN ATQDLLMAGS VSAMFGSAVW 120
  121 QLVASFLKLP ISGTHCIVGA TIGFSLVAKG QEGIKWSELI KIVMSWFVSP LLSGIMSGIL 180
  181 FFLVRAFILR KADPVPNGLR ALPIFYACTI GINLFSIMYT GAPLLGFDKL PLWGTILISV 240
  241 GCAVFCALIV WFFVCPRMKR KIEREVKSSP SESPLMEKKN NLKDHEETKM APGDVENRNP 300
  301 VSEVVCATGP LRAVVEERTV SFKLGDLEEA PERERLPMDL KEETNIDGTI NGAVQLPNGN 360
  361 LVQFSQTVSN QINSSGHYQY HTVHKDSGLY KELLHKLHLA KVGDCMGDSG DKPLRRNNSY 420
  421 TSYTMAICGM PLDSFRAKEG EQKGDEMETL TWPNADTKKR IRMDSYTSYC NAVSDLHSES 480
  481 EMDMSVKAEM GLGDRKGSSG SLEEWYDQDK PEVSLLFQFL QILTACFGSF AHGGNDVSNA 540
  541 IGPLVALYLV YETRDVTTKE ATPIWLLLYG GVGICMGLWV WGRRVIQTMG KDLTPITPSS 600
  601 GFSIELASAF TVVVASNIGL PISTTHCKVG SVVSVGWLRS KKAVDWRLFR NIFMAWFVTV 660
  661 PISGVISAAI MAVFKHIILP V