YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109490992, gi...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQRLSGGRS CLDVPGRFLP QPPPPPPPVR RKLALLFAML CIWLYMFLYS CAGSCTAAPG  60
   61 LLLLGSGSRA THAQPALITA PNETSPKMPF RAPPANSLVA GKDKTVGAGS QEEQSPEAPD 120
  121 SPSPISSFFS GAGSKQLPQA IIIGVKKGGT RALLEFLRVH PDVRAVGAEP HFFDRSYHKG 180
  181 LAWYRDLMPR TLEGQITMEK TPSYFVTREA PARISAMSKD TKLIVVVRDP VTRAISDYTQ 240
  241 TLSKRPDIPS FESLTFRNRS AGLIDTSWSA IQIGLYAKHL EPWLRHFPLG QMLFVSGERL 300
  301 VSDPAGELRR VQDFLGLKRI ITDKHFYFNQ TKGFPCLKKA EGSGKPHCLG KTKGRAHPTI 360
  361 AREVLRQLRD FYRPFNRKFY QMTGRDFGWD

Type	Start	End	Confidence
Cytoplasmic	1	39	0.69
Transmembrane Helix	40	58	0.71
Non-Cytoplasmic	59	390	0.96