YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BRS3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQRQPQSPN QTLISITNDT ETSSSAVSND TTPKGWTGDN SPGIEALCAI YITYAVIISV  60
   61 GILGNAILIK VFFKTKSMQT VPNIFITSLA FGDLLLLLTC VPVDATHYLA EGWLFGKVGC 120
  121 KVLSFIRLTS VGVSVFTLTI LSADRYKAVV KPLERQPSNA ILKTCAKAGG IWIMAMIFAL 180
  181 PEAIFSNVYT FQDPNRNVTF ESCNSYPISE RLLQEIHSLL CFLVFYIIPL SIISVYYSLI 240
  241 ARTLYKSTLN IPTEEQSHAR KQIESRKRIA KTVLVLVALF ALCWLPNHLL YLYHSFTYES 300
  301 YAEPSDVPFV VTIFSRVLAF SNSCVNPFAL YWLSKTFQKH FKAQLCCFKA EQPEPPLGDT 360
  361 PLNNLTVMGR VPATGSAHVS EISVTLFSGS TAKKGEDKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.93
Transmembrane Helix	50	69	0.94
Cytoplasmic	70	83	0.76
Transmembrane Helix	84	105	0.89
Non-Cytoplasmic	106	122	0.87
Transmembrane Helix	123	143	0.92
Cytoplasmic	144	163	0.89
Transmembrane Helix	164	185	0.88
Non-Cytoplasmic	186	215	0.96
Transmembrane Helix	216	240	0.88
Cytoplasmic	241	268	0.98
Transmembrane Helix	269	291	0.90
Non-Cytoplasmic	292	311	0.89
Transmembrane Helix	312	333	0.88
Cytoplasmic	334	399	0.94