YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149022444, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHSNDTKVT EFILLGFAGQ HESWHILFVV FLIIYIATLV GNIGMILLIK LHSSLHTPMY  60
   61 FFLQHLAFVD LCYSSAITPK TLQNFVSSKP SISFTGCIVQ LLVYGIFVTS DCFILAAMAV 120
  121 DRYVAICNPL RYPIIMSQRL CILLLLGSYT MGFLNATVNT GFTFLSNFCK SNTINHFFCD 180
  181 VPPILALSCS SIDLNIMVLT IFVGFNLTFT VSVVILSYTF ILAAILRMSS AAGRRKAFST 240
  241 CASHMTAVTI FYGTLSYMYV LHGTNKSQEQ EKVASVFYGI MIPMLNPLIY SLRNQDVIGA 300
  301 LRNIGNKCF

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.72
Transmembrane Helix	24	49	0.88
Cytoplasmic	50	59	0.61
Transmembrane Helix	60	77	0.72
Non-Cytoplasmic	78	97	0.74
Transmembrane Helix	98	120	0.83
Cytoplasmic	121	139	0.75
Transmembrane Helix	140	158	0.92
Non-Cytoplasmic	159	200	0.86
Transmembrane Helix	201	226	0.83
Cytoplasmic	227	239	0.84
Transmembrane Helix	240	261	0.86
Non-Cytoplasmic	262	273	0.86
Transmembrane Helix	274	292	0.64
Cytoplasmic	293	309	0.66