YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TNF15_RAT
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEELGLGFG EAVPVEMLPE GCRHRREART GLAARSKACL ALTCCLLSFP ILAGLSTLLM  60
   61 TGQLRIPGKD CMFPTVTEER SAPSAQPVYT PSRDKPKAHL TIMRQTPVPH LKNELAALHW 120
  121 ENNLGMAFTK NRMNYTNKFL VIPESGDYFI YSQITFRGTT SECGDISRVR RPKKPDSITV 180
  181 VITKVADSYP EPAHLLTGTK SVCEISSNWF QPIYLGAMFS LEEGDRLMVN VSDISLVDYT 240
  241 KEDKTFFGAF LI

Type	Start	End	Confidence
Cytoplasmic	1	37	0.88
Transmembrane Helix	38	58	0.87
Non-Cytoplasmic	59	252	0.98