YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50927779, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSRSPRPP PLVILLLVLS LWLPLGTGNS LPTENRLVNS CTQARKKCEA NPACKAAYQH  60
   61 LDSCTPSLSS PLPSGESATS AACLEAAQQL RNSSLIDCRC HRRMKHQATC LDIYWTVHPV 120
  121 RSLGDYELDV SPYEDTVTSK PWKMNLSKLS MLKPDSDLCL KFAMLCTLND KCDRLRKAYG 180
  181 EACSGIRCQR HLCLAQLRSF FEKAAESHAQ GLLLCPCAPE DAGCGERRRN TIAPSCALPS 240
  241 VAPNCLDLRS FCRADPLCRS RLMDFQTHCH PMDILGTCAT EQSRCLRAYL GLIGTAMTPN 300
  301 FISKVNTTVA LGCTCRGSGN LQDECEQLEK SFSQNPCLME AIAAKMRFHR QLFSQDWADS 360
  361 TFSVMQQQNS SPALRPQLRL PVLSFFILTL ILLQTLW

Type	Start	End	Confidence
Signal Peptide	1	30	0.97
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	377	0.99
Transmembrane Helix	378	396	0.68
Cytoplasmic	397	397	0.72