YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	T2R16_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPTQVTIFS IIMYVLESLV IIVQSCTTVA VLFREWMHFQ RLSPVEIILI SLGISHFCLQ  60
   61 WTSMLYNFGT YSRPVLLFWK VSVVWEFMNV LTFWLTSLLA VLYCVKVSSF SHPVFLWLRL 120
  121 KILKLVLWLL LGALIASCLS IIPSVVKYHI QMELLTLDHL PKNSSLILRL QMFEWYFSNP 180
  181 FKMIGFGVPF LVFLISIILL TVSLVQHWGQ MKHYSSSSSS LRAQCTVLKS LATFFIFFTS 240
  241 YFLTIVVSFI GTVFDKKSWF WVCEAVIYGL VCIHFTSLMM SNPTLKKALR LQFWSPESS

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.80
Transmembrane Helix	11	33	0.87
Cytoplasmic	34	44	0.80
Transmembrane Helix	45	64	0.90
Non-Cytoplasmic	65	84	0.86
Transmembrane Helix	85	105	0.88
Cytoplasmic	106	124	0.82
Transmembrane Helix	125	146	0.94
Non-Cytoplasmic	147	182	0.96
Transmembrane Helix	183	205	0.92
Cytoplasmic	206	226	0.88
Transmembrane Helix	227	250	0.88
Non-Cytoplasmic	251	259	0.77
Transmembrane Helix	260	280	0.89
Cytoplasmic	281	299	0.90