YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADA2C_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.87
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	48	0.96
Transmembrane Helix	49	77	0.86
Cytoplasmic	78	87	0.87
Transmembrane Helix	88	110	0.91
Non-Cytoplasmic	111	124	0.81
Transmembrane Helix	125	145	0.89
Cytoplasmic	146	169	0.87
Transmembrane Helix	170	190	0.92
Non-Cytoplasmic	191	208	0.95
Transmembrane Helix	209	231	0.94
Cytoplasmic	232	375	0.99
Transmembrane Helix	376	395	0.98
Non-Cytoplasmic	396	418	0.88
Transmembrane Helix	419	440	0.90
Cytoplasmic	441	458	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPALAAAL AAAAAEGPNG SDAGEWGSGG GANASGTDWG PPPGQYSAGA VAGLAAVVGF  60
   61 LIVFTVVGNV LVVIAVLTSR ALRAPQNLFL VSLASADILV ATLVMPFSLA NELMAYWYFG 120
  121 QVWCGVYLAL DVLFCTSSIV HLCAISLDRY WSVTQAVEYN LKRTPRRVKA TIVAVWLISA 180
  181 VISFPPLVSF YRRPDGAAYP QCGLNDETWY ILSSCIGSFF APCLIMGLVY ARIYRVAKLR 240
  241 TRTLSEKRGP AGPDGASPTT ENGLGKAAGE NGHCAPPRTE VEPDESSAAE RRRRRGALRR 300
  301 GGRRREGAEG DTGSADGPGP GLAAEQGART ASRSPGPGGR LSRASSRSVE FFLSRRRRAR 360
  361 SSVCRRKVAQ AREKRFTFVL AVVMGVFVLC WFPFFFSYSL YGICREACQL PEPLFKFFFW 420
  421 IGYCNSSLNP VIYTVFNQDF RRSFKHILFR RRRRGFRQ