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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EPHB6_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.28
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASENTAGSG SRVAGMVYSL WLLVLGPSVL ALEEVLLDTT GETSEIGWLT YPPGGWDEVS  60
   61 VLDDQRRLTR TFEACHVAGL PPGSGQDNWL QTHFVERRGA QRAHIRLHFS VRACSSLGVS 120
  121 GGTCRETFTL YYRQADEPDS PDSISAWHLK RWTKVDTIAA DESFPASSSS SSWAVGPHRT 180
  181 DQRVGLQLNV KERSFGPLTQ RGFYVAFQDT GACLALVAVK LFSYTCPSVL RAFASFPETQ 240
  241 ASGAGGASLV AAVGTCVAHA EPEEDGVGGQ AGGSPPRLHC NGEGRWMVAV GGCRCQPGHQ 300
  301 PARGDKLCQA CPEGSYKALP GNVPCSPCPA RSHSPDPAAP VCPCLQGFYR ASSDPPEAPC 360
  361 TGPPSAPREL WFEVQGSALM LHWRLPQELG GRGDLLFNVV CKECGGHKEP SSGGMCRRCR 420
  421 DEVHFDPRQR GLTESRVLVG GLRAHVPYIL EVQAVNGVSE LSPDPPQAAA INVSTSHEVP 480
  481 SAVPVMHQVS RAANSITVSW PQPEQTNGNI LDYQLRYYDQ AEDESHSFTM TSETNTATVT 540
  541 RLSPGHIYGF QVRARTAAGH GPYGGKVYFQ TLPQGELSSQ LPEKLSLVIG SILGALAFLL 600
  601 LAAITVLAVI FQRKRRGTGY TEQLQQYSSP GLGVKYYIDP STYDDPCQAI RELAREVDPT 660
  661 YIKIEEVIGA GSFGEVRRGR LQPRGRREQA VAIQALWAGG AESLKMTFLG RAALLGQFQH 720
  721 PNILRLEGVV TRSRPVMVLT ELMELGPLDS FLRQREGQFS SLQLVAMQRG VAAAMQYLSS 780
  781 FAFVHRALSA RSVLVNSHLV CKVARLGHSP QGSSSLLRWA APEVITHGKY TTSSDVWSFG 840
  841 ILMWEVMSYG ERPYWDMSDQ EVLNAIEQEF RLPPPPGCPT GLHLLMLDTW QKDRARRPHF 900
  901 DQLVAAFDKM IRKPDTLQAE GSSGDRPSQA LLNPVALDFP CLDSPQAWLS AIGLECYQDN 960
  961 FSKFGLSTFS DVAQLSLEDL PGLGITLAGH QKKLLHNIQL LQQHLRQPGS VEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle