YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S23A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.48
Transmembrane Helix	55	77	0.78
Cytoplasmic	78	84	0.47
Transmembrane Helix	85	107	0.83
Non-Cytoplasmic	108	110	0.40
Transmembrane Helix	111	130	0.48
Cytoplasmic	131	164	0.85
Transmembrane Helix	165	193	0.75
Non-Cytoplasmic	194	213	0.57
Transmembrane Helix	214	237	0.85
Cytoplasmic	238	255	0.64
Transmembrane Helix	256	280	0.85
Non-Cytoplasmic	281	317	0.63
Transmembrane Helix	318	340	0.83
Cytoplasmic	341	405	0.60
Transmembrane Helix	406	426	0.91
Non-Cytoplasmic	427	433	0.73
Transmembrane Helix	434	454	0.94
Cytoplasmic	455	463	0.71
Transmembrane Helix	464	482	0.90
Non-Cytoplasmic	483	498	0.86
Transmembrane Helix	499	519	0.80
Cytoplasmic	520	604	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAQEDPGSS KQHECPDSAG TSTRDQQAPL PAEPKFDMLY KIEDVPPWYL CILLGFQHYL  60
   61 TCFSGTIAVP FLLAEALCVG RDQHMISQLI GTIFTCVGIT TLIQTTVGIR LPLFQASAFA 120
  121 FLVPAKAILA LERWKCPPEE EIYGNWSMPL NTSHIWHPRI REVQGAIMVS SVVEVVIGLL 180
  181 GLPGALLSYI GPLTVTPTVS LIGLSVFQAA GDRAGSHWGI SACSILLIVL FSQYLRNLTF 240
  241 LLPVYRWGKG LTLFRIQIFK MFPIVLAIMT VWLLCYVLTL TDVLPADPTV YGFQARTDAR 300
  301 GDIMAISPWI RIPYPCQWGL PTVTVAAVLG MFSATLAGII ESIGDYYACA RLAGAPPPPV 360
  361 HAINRGIFTE GVCCIIAGLL GTGNGSTSSS PNIGVLGITK VGSRRVVQYG AGIMLILGAI 420
  421 GKFTALFASL PDPILGGMFC TLFGMITAVG LSNLQFVDMN SSRNLFVLGF SMFFGLTLPN 480
  481 YLDSNPGAIN TGVPEVDQIL TVLLTTEMFV GGCLAFILDN TVPGSPEERG LIQWKAGAHA 540
  541 NSETLASLKS YDFPFGMGMV KRTTFFRYIP ICPVFRGFSK TENQPAVLED APDNTETGSV 600
  601 CTKV