YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TS1R3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.94
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	572	0.78
Transmembrane Helix	573	598	0.88
Cytoplasmic	599	607	0.47
Transmembrane Helix	608	629	0.93
Non-Cytoplasmic	630	643	0.50
Transmembrane Helix	644	665	0.59
Cytoplasmic	666	684	0.84
Transmembrane Helix	685	707	0.94
Non-Cytoplasmic	708	734	0.87
Transmembrane Helix	735	756	0.91
Cytoplasmic	757	767	0.76
Transmembrane Helix	768	788	0.92
Non-Cytoplasmic	789	796	0.67
Transmembrane Helix	797	816	0.92
Cytoplasmic	817	858	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGLAILGLS LAAFLELGMG SSLCLSQQFK AQGDYILGGL FPLGTTEEAT LNQRTQPNGI  60
   61 LCTRFSPLGL FLAMAMKMAV EEINNGSALL PGLRLGYDLF DTCSEPVVTM KPSLMFMAKV 120
  121 GSQSIAAYCN YTQYQPRVLA VIGPHSSELA LITGKFFSFF LMPQVSYSAS MDRLSDRETF 180
  181 PSFFRTVPSD RVQLQAVVTL LQNFSWNWVA ALGSDDDYGR EGLSIFSGLA NSRGICIAHE 240
  241 GLVPQHDTSG QQLGKVVDVL RQVNQSKVQV VVLFASARAV YSLFSYSILH DLSPKVWVAS 300
  301 ESWLTSDLVM TLPNIARVGT VLGFLQRGAL LPEFSHYVET RLALAADPTF CASLKAELDL 360
  361 EERVMGPRCS QCDYIMLQNL SSGLMQNLSA GQLHHQIFAT YAAVYSVAQA LHNTLQCNVS 420
  421 HCHTSEPVQP WQLLENMYNM SFRARDLTLQ FDAKGSVDME YDLKMWVWQS PTPVLHTVGT 480
  481 FNGTLQLQHS KMYWPGNQVP VSQCSRQCKD GQVRRVKGFH SCCYDCVDCK AGSYRKHPDD 540
  541 FTCTPCGKDQ WSPEKSTTCL PRRPKFLAWG EPAVLSLLLL LCLVLGLTLA ALGLFVHYWD 600
  601 SPLVQASGGS LFCFGLICLG LFCLSVLLFP GRPRSASCLA QQPMAHLPLT GCLSTLFLQA 660
  661 AEIFVESELP LSWANWLCSY LRGPWAWLVV LLATLVEAAL CAWYLMAFPP EVVTDWQVLP 720
  721 TEVLEHCRMR SWVSLGLVHI TNAVLAFLCF LGTFLVQSQP GRYNRARGLT FAMLAYFIIW 780
  781 VSFVPLLANV QVAYQPAVQM GAILFCALGI LATFHLPKCY VLLWLPELNT QEFFLGRSPK 840
  841 EASDGNSGSS EATRGHSE