YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5A7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.96
Transmembrane Helix	7	27	0.95
Cytoplasmic	28	47	0.85
Transmembrane Helix	48	66	0.93
Non-Cytoplasmic	67	81	0.86
Transmembrane Helix	82	103	0.90
Cytoplasmic	104	126	0.90
Transmembrane Helix	127	151	0.83
Non-Cytoplasmic	152	162	0.69
Transmembrane Helix	163	184	0.88
Cytoplasmic	185	191	0.68
Transmembrane Helix	192	212	0.89
Non-Cytoplasmic	213	237	0.93
Transmembrane Helix	238	258	0.92
Cytoplasmic	259	271	0.88
Transmembrane Helix	272	296	0.90
Non-Cytoplasmic	297	329	0.92
Transmembrane Helix	330	353	0.80
Cytoplasmic	354	377	0.87
Transmembrane Helix	378	398	0.95
Non-Cytoplasmic	399	404	0.76
Transmembrane Helix	405	427	0.79
Cytoplasmic	428	434	0.62
Transmembrane Helix	435	456	0.72
Non-Cytoplasmic	457	480	0.70
Transmembrane Helix	481	500	0.64
Cytoplasmic	501	580	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFHVEGLVA IILFYLLIFL VGIWAAWKTK NSGNAEERSE AIIVGGRDIG LLVGGFTMTA  60
   61 TWVGGGYING TAEAVYGPGC GLAWAQAPIG YSLSLILGGL FFAKPMRSKG YVTMLDPFQQ 120
  121 IYGKRMGGLL FIPALMGEMF WAAAIFSALG ATISVIIDVD VNISVIVSAL IAILYTLVGG 180
  181 LYSVAYTDVV QLFCIFIGLW ISVPFALSHP AVTDIGFTAV HAKYQSPWLG TIESVEVYTW 240
  241 LDNFLLLMLG GIPWQAYFQR VLSSSSATYA QVLSFLAAFG CLVMALPAIC IGAIGASTDW 300
  301 NQTAYGFPDP KTKEEADMIL PIVLQYLCPV YISFFGLGAV SAAVMSSADS SILSASSMFA 360
  361 RNIYQLSFRQ NASDKEIVWV MRITVFVFGA SATAMALLTK TVYGLWYLSS DLVYIIIFPQ 420
  421 LLCVLFIKGT NTYGAVAGYI FGLFLRITGG EPYLYLQPLI FYPGYYPDKN GIYNQRFPFK 480
  481 TLSMVTSFFT NICVSYLAKY LFESGTLPPK LDIFDAVVSR HSEENMDKTI LVRNENIKLN 540
  541 ELAPVKPRQS LTLSSTFTNK EALLDVDSSP EGSGTEDNLQ