YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT7R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDVNSSGRP DLYGHLRSLI LPEVGRGLQD LSPDGGAHPV VSSWMPHLLS GFLEVTASPA  60
   61 PTWDAPPDNV SGCGEQINYG RVEKVVIGSI LTLITLLTIA GNCLVVISVC FVKKLRQPSN 120
  121 YLIVSLALAD LSVAVAVMPF VSVTDLIGGK WIFGHFFCNV FIAMDVMCCT ASIMTLCVIS 180
  181 IDRYLGITRP LTYPVRQNGK CMAKMILSVW LLSASITLPP LFGWAQNVND DKVCLISQDF 240
  241 GYTIYSTAVA FYIPMSVMLF MYYQIYKAAR KSAAKHKFPG FPRVQPESVI SLNGVVKLQK 300
  301 EVEECANLSR LLKHERKNIS IFKREQKAAT TLGIIVGAFT VCWLPFFLLS TARPFICGTS 360
  361 CSCIPLWVER TCLWLGYANS LINPFIYAFF NRDLRTTYRS LLQCQYRNIN RKLSAAGMHE 420
  421 ALKLAERPER SEFVLQNSDH CGKKGHDT

Type	Start	End	Confidence
Non-Cytoplasmic	1	88	0.63
Transmembrane Helix	89	112	0.88
Cytoplasmic	113	120	0.90
Transmembrane Helix	121	143	0.90
Non-Cytoplasmic	144	160	0.78
Transmembrane Helix	161	181	0.94
Cytoplasmic	182	201	0.89
Transmembrane Helix	202	223	0.88
Non-Cytoplasmic	224	243	0.88
Transmembrane Helix	244	266	0.89
Cytoplasmic	267	327	0.99
Transmembrane Helix	328	349	0.91
Non-Cytoplasmic	350	372	0.84
Transmembrane Helix	373	390	0.62
Cytoplasmic	391	448	0.69