YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3168585, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.68
Transmembrane Helix	10	31	0.92
Non-Cytoplasmic	32	41	0.63
Transmembrane Helix	42	70	0.79
Cytoplasmic	71	85	0.60
Transmembrane Helix	86	105	0.82
Non-Cytoplasmic	106	115	0.65
Transmembrane Helix	116	139	0.83
Cytoplasmic	140	214	0.89
Transmembrane Helix	215	236	0.85
Non-Cytoplasmic	237	258	0.90
Transmembrane Helix	259	281	0.89
Cytoplasmic	282	320	0.93
Transmembrane Helix	321	340	0.90
Non-Cytoplasmic	341	365	0.84
Transmembrane Helix	366	386	0.87
Cytoplasmic	387	411	0.92
Transmembrane Helix	412	430	0.85
Non-Cytoplasmic	431	447	0.84
Transmembrane Helix	448	466	0.89
Cytoplasmic	467	474	0.61
Transmembrane Helix	475	496	0.79
Non-Cytoplasmic	497	501	0.63
Transmembrane Helix	502	525	0.79
Cytoplasmic	526	534	0.66
Transmembrane Helix	535	557	0.89
Non-Cytoplasmic	558	587	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCWPALWA YRFYLIVLCL PIFLLPLPLI VQTKEAYCAY SIILMALLWC TEALPLAVTA  60
   61 LFPIVLFPLM GIMDASEVCI EYFKDTNILF VGGLMVAIAV EHWNLHKRIA LQVLLIIGVR 120
  121 PALLLLGFML VTAFLSMWIS NTATTAMMVP IGHAVLEQLQ GSKKDVEGGN NNPTFELQEE 180
  181 CPQKEVTKLD NGQPVSAPSE PRTQKTQEHH RFSQGLSLCI CYSASIGGIA TLTGTTPNLV 240
  241 LQGQVNSLFP QNGNVVNFAS WFGFAFPTMI ILLLLAWLWL QVLFLGVNFR KNFGFGEGEE 300
  301 ERKQAAFQVI KTQYRLLGPM SFAEKTVTVL FVLLVVLWFT REPGFFPGWG DTVFANEKGQ 360
  361 SMASDGTVAI FISLVMFIIP SKIPGLMQDP KKPGKLKAPP AILTWKTVND KMPWNIVILL 420
  421 GGGFALAKGS EQSGLSEWLG DKLTPLQHIP PSATAVILCL LIAIFTECTS NVATTTLFLP 480
  481 ILASMAQAIC LHPLYVMLPC TLAASLAFML PVATPPNAIV FSFGGLKVSD MARAGFLLNI 540
  541 IGVLAITLSI NSWSIPIFKL DTFPSWAHSN TSQCLLNPSN STVPGGL