YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149022455, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDNRTILT EFILVGFSAD PHWQLILFGI FLTIYLMTLS GNMTLIILIR IDSRLHTPMY  60
   61 FFIGGLSFLD FWYNSVYIPK ILVNCVSDDK RISLAGCGTQ FFFSCVAAYT ECYLLAAMAY 120
  121 DRHAAICSPL LYSSIMSTSL CTGLVAGSYV GGILNAIAHT ANTFRLRFCG KNIIDHFFCD 180
  181 VLPLVKMSCT DTHVYVKILS SMVGFTVLSS ILAIIISYFN ILLAILRIRS ASGRRKAFST 240
  241 CASHLVSVTL FYGSLLFMYS RPSSNYSLER DKVAAMFYTI INPFLNPFIY SLRNKDVKEA 300
  301 FKKLMQRIQQ QT

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.87
Transmembrane Helix	25	48	0.88
Cytoplasmic	49	56	0.78
Transmembrane Helix	57	74	0.88
Non-Cytoplasmic	75	96	0.73
Transmembrane Helix	97	117	0.80
Cytoplasmic	118	129	0.76
Transmembrane Helix	130	153	0.83
Non-Cytoplasmic	154	201	0.90
Transmembrane Helix	202	226	0.85
Cytoplasmic	227	236	0.92
Transmembrane Helix	237	259	0.87
Non-Cytoplasmic	260	273	0.92
Transmembrane Helix	274	292	0.54
Cytoplasmic	293	312	0.55