YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149022456, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHMKINSTV TEFVFLGLSS DPKVQLVLFF VFLFFYMLSV VGNIIIITII LIEPRLQTPM  60
   61 YFFLTNLSFL DICYTSTNVP QMLSNMVWGK KTIPFASCAT QMYFSLSFGM IECVLLGVMA 120
  121 YDRYAAICHP LHYTVIMDQN TCVQLAAISW SSSFLSSMVI NVLTLSLPYC GPNVLNHFFC 180
  181 EVPSVLRLAC TDTSLTELVV FVFSIIIVFI PFLLIIVSYA RILLSVLRMR SASGRYKALS 240
  241 TCASHLTVVT LFYGTAIFMY MRPQSKSSRA GGKVIAVFYT VVTPMLNPLI YSLRNQDVKG 300
  301 SLRRALTKQK T

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.60
Transmembrane Helix	26	52	0.86
Cytoplasmic	53	59	0.57
Transmembrane Helix	60	78	0.66
Non-Cytoplasmic	79	101	0.71
Transmembrane Helix	102	121	0.85
Cytoplasmic	122	141	0.77
Transmembrane Helix	142	165	0.75
Non-Cytoplasmic	166	198	0.85
Transmembrane Helix	199	223	0.86
Cytoplasmic	224	237	0.89
Transmembrane Helix	238	260	0.87
Non-Cytoplasmic	261	273	0.82
Transmembrane Helix	274	293	0.79
Cytoplasmic	294	311	0.80