YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CC90B_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNRWIWRFL RPECSGIRWI SSPHGRLSPA LRRGFLTTTT KSDYDRRPVE ITPLEQRKLT  60
   61 FDTHALVQDL ETHGFDKGQA QTIVSVLSTL SNVSLDTVYK EMVTKAQQEI TIQQLMAHLD 120
  121 SIRKDMVILE KSEFANLRAE NEKMKIELDQ VKQQLINETS RIRADNRLDI NLERSRVTDM 180
  181 FTDQEKQLME ATNEFTKKDM QTKSIISETS NKIDTEIASL KTLMESSKLE TIRYLAASVF 240
  241 TCLAIALGFY RFWKEN

Type	Start	End	Confidence
Cytoplasmic	1	230	0.50
Transmembrane Helix	231	253	0.87
Non-Cytoplasmic	254	256	0.52