YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVDDLQFE EFGDGATLLA ANPDATTINI EDPSVSFKHQ PRPPGSLGRE EDEELLGTND  60
   61 SDETELLAGQ KKSSPFWTFE YYQTFFDVDT YQVFDRIKGS LLPVPGKNFV RLYIRSNPDL 120
  121 YGPFWICATL VFAIAISGNL SNFLIHLGEK TYHYVPEFQK VSIAATVIYA YAWLVPLALW 180
  181 GFLLWRNSKV MNIVSYSFLE IVCVYGYSLF IYIPTAVLWI IPQRVIRWVL VTIALGISGS 240
  241 VLAMTFWPAV REDNRRVALA TIVTIMLLHV LLSVGCLAYF FDAPEMDHLP AAITTPNQTV 300
  301 AAAKSS

Type	Start	End	Confidence
Cytoplasmic	1	120	0.98
Transmembrane Helix	121	143	0.88
Non-Cytoplasmic	144	162	0.87
Transmembrane Helix	163	184	0.93
Cytoplasmic	185	195	0.81
Transmembrane Helix	196	218	0.85
Non-Cytoplasmic	219	227	0.70
Transmembrane Helix	228	249	0.93
Cytoplasmic	250	257	0.88
Transmembrane Helix	258	281	0.93
Non-Cytoplasmic	282	306	0.97