YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|598372, gi\|83...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGRCFPEG CTVEGAAVKQ VSWFLIYSCV CSCVCWGVSV PAQEGGRKAG TFTCFSNSVF  60
   61 RIDCHWSAPE PGSRAWLLFT SNQGTDIKHK CTFWDSRCTL VLPKEEAFLP FDNFTITLHR 120
  121 CVMGQEQVSL VDSQYLPRRH IKLDPPSDLQ SNVSSGRCVL TWGISFGLEP LITSLSYELA 180
  181 FKRQEEAWEQ ARLKDRIVGV TWLVLEAIEL NPDTIYEARL RVQMALESYD DKTEGEYYKS 240
  241 HWSEWSQSVS FPSPRRKTQG LLIPRWQGSA SILVAVPIFL LLTGLIHFLF RLSPKVKRIF 300
  301 YQNVPSPEAF FHPLYSVYHG DFQTWIGARR AGPQARQDGA SAPSGDSESS IWEAIATLTY 360
  361 SPACSVQFPS LKWEATAPGF PGPPGSELVL PAGCLELEGQ PSAYLPQEDW APLGSARPPP 420
  421 LDSDSGSSDY CMLDCREEYD LSVFPEHTLS PEFTLAQPVA LAVSSRA

Type	Start	End	Confidence
Non-Cytoplasmic	1	267	0.61
Transmembrane Helix	268	290	0.90
Cytoplasmic	291	467	0.61