YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12750769
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPTNISVQM GLTSTWRYGT GPGIGTVTMV SWGRFICLVL VTMATLSLAR PSFSLVEDTT  60
   61 LEPEEPPTKY QISQPEACVV APGESLELRC MLKDAAVISW TKDGVHLGPN NRTVLIGEYL 120
  121 QIKGATPRDS GLYACAAART VDSETLYFMV NVTDAISSGD DEDDTDSSED FVSENRSNQR 180
  181 APYWTNTEKM EKRLHAVPAA NTVKFRCPAG GNPTPTMRWL KNGKEFKQEH RIGGYKVRNQ 240
  241 HWSLIMESVV PSDKGNYTCL VENEYGSINH TYHLDVVERS PHRPILQAGL PANASTVVGG 300
  301 DVEFVCKVYS DAQPHIQWIK HVEKNGSKYG PDGLPYLKVL KAAGVNTTDK EIEVLYIRNV 360
  361 TFEDAGEYTC LAGNSIGISF HSAWLTVLPA PVREKEITAS PDYLEIAIYS IGVFLIACMV 420
  421 VTVIFCRMKT TTKKPDFSSQ PAVHKL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.64
Transmembrane Helix	21	46	0.70
Non-Cytoplasmic	47	405	0.77
Transmembrane Helix	406	426	0.94
Cytoplasmic	427	446	0.92