YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEMT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLLGYVDP TEPSFVAAVL TIVFNPLFWN VVARWEQRTR KLSRAFGSPY LACYSLGSII  60
   61 LLLNILRSHC FTQAMMSQPK MEGLDSHTIY FLGLALLGWG LVFVLSSFYA LGFTGTFLGD 120
  121 YFGILKESRV TTFPFSVLDN PMYWGSTANY LGWALMHASP TGLLLTVLVA LVYVVALLFE 180
  181 EPFTAEIYRR KATRLHKRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.73
Transmembrane Helix	13	33	0.89
Cytoplasmic	34	45	0.70
Transmembrane Helix	46	68	0.79
Non-Cytoplasmic	69	88	0.60
Transmembrane Helix	89	113	0.86
Cytoplasmic	114	129	0.46
Transmembrane Helix	130	147	0.47
Non-Cytoplasmic	148	157	0.58
Transmembrane Helix	158	179	0.89
Cytoplasmic	180	199	0.83