YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTSS1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.58
Transmembrane Helix	37	59	0.83
Cytoplasmic	60	68	0.57
Transmembrane Helix	69	91	0.89
Non-Cytoplasmic	92	98	0.56
Transmembrane Helix	99	123	0.88
Cytoplasmic	124	185	0.60
Transmembrane Helix	186	206	0.80
Non-Cytoplasmic	207	217	0.85
Transmembrane Helix	218	240	0.90
Cytoplasmic	241	286	0.93
Transmembrane Helix	287	307	0.80
Non-Cytoplasmic	308	318	0.70
Transmembrane Helix	319	340	0.83
Cytoplasmic	341	350	0.87
Transmembrane Helix	351	373	0.86
Non-Cytoplasmic	374	380	0.86
Transmembrane Helix	381	404	0.92
Cytoplasmic	405	473	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASCVGSRTL SKDDVNYRMH FRMINEQQVE DITIDFFYRP HTITLLSFTI ISLMYFAFTR  60
   61 DDCVPEDNIW RGILSVIFFF LIISVLAFPN GPFTRPHPAL WRMVFGLSVL YFLFLVFLLF 120
  121 LNFEQVKSLM YWLDPNLRYA TREADIMEYA VNCHVITWER IVSHFDIFAF GHFWGWAMKA 180
  181 LLIRSYGLCW TISITWELTE LFFMHLLPNF AECWWDQVIL DILLCNGGGI WLGMVVCRFL 240
  241 EMRTYHWASF KDIHTTTGKI KRAVLQFTPA SWTYVRWFDP KSSFQRVAGI YLFMIIWQLT 300
  301 ELNTFFLKHI FVFQASHPLS WCRILFIGCI TAPTVRQYYA YLTDTQCKRV GTQCWVFGVI 360
  361 GFLEAIVCIK FGQDLFSKTQ ILYVVLWLLC VAFTTFLCLY GMVWYAEHYG HREKTYSECE 420
  421 DGTYSPEISW YHGKGSKGSE DSPPKHSNNN ESHSSRRRNR HSKSKVTNGV GKK