YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4868345
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYWDKFVKRK VINKYGDLYG AERIAELLGL DKNALDFSPV EEAKAEAASL VSWLSSIDMK  60
   61 YHIWKLGVVF TDNSFLYLAW YTTMSVLGHY NNFFFAAHLL DIAMGFKTLR TILSSVTHNG 120
  121 KQLVLTVGLL AVVVYLYTVV AFNFFRKFYN KSEDDDEPDM KCDDMMTCYL FHMYVGVRAG 180
  181 GGIGDEIEDP AGDPYEMYRI VFDITFFFFV IVILLAIIQG LIIDAFGELR DQQEQVREDM 240
  241 ETKCFICG

Type	Start	End	Confidence
Cytoplasmic	1	61	0.95
Transmembrane Helix	62	81	0.83
Non-Cytoplasmic	82	93	0.59
Transmembrane Helix	94	111	0.63
Cytoplasmic	112	122	0.56
Transmembrane Helix	123	142	0.93
Non-Cytoplasmic	143	203	0.65
Transmembrane Helix	204	223	0.94
Cytoplasmic	224	248	0.67