YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62650782, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPTLRYVGG VCGRIGCSVA GGFLRASGPV SGVLGLLCRG GRSSSTSSFD IVIVGGGIVG  60
   61 LASARTLILK HPELSIGVVE KEKDLALHQT GRNSGVIHSG IYYKPESLKA KLCVEGAALI 120
  121 YEYCNLKGIP YRQCGKLIVA VEQEEIPRLQ ALYERGLQNG VQGLRLIQQE DIKKKEPYCR 180
  181 GLMAIDCPYT GIVNYQQVAL SFAQDFQEAG GSILKDFEVK DIGIAKEDPP RSKDGMKYPI 240
  241 AVKNSKGKEI QCRYVVTCAG LYSDRISELS GCNPDPQIVP FRGDYLVLKP EKGYLVKGNI 300
  301 YPVPDSRLPF LGVHFTPRLD GSIWLGPNAV LAFKREGYRP FDFNARDIME VILKSGFIKL 360
  361 VFQNFSYGAS EIYKACFLSE TVKHLQKFIP EITTNDVLRG PAGVRAQALD RDGNLVDDFV 420
  421 FDGGAGEIGD RILHVRNAPS PAATSSLAIS RMIAEEVQQR FKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.44
Transmembrane Helix	15	38	0.50
Cytoplasmic	39	46	0.45
Transmembrane Helix	47	68	0.64
Non-Cytoplasmic	69	463	0.80