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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1117992, gi|8...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPAARETRT PPRSPGLRWA LLPLLLLLRQ GQVVCTGAAP SPVFDVEAVT SPTSVVLTWK  60
   61 HNDSATSEYK INEGNTLRYT VKNQTSFNIT GLSPATSYKF SITLGTVNET SGKPTYKNIT 120
  121 TEPWPVSDLQ VAYIGVTQAL LAWSNANGTA SYRMQIVELT TNSSGGISDL KPGTHKSLAV 180
  181 QGSNETQHDL WVTEGVSDPP SARDPSLTEV LLTELKPDTQ YKVTIYSQAA DGTEGQPGNK 240
  241 VFKTNPIQVS DIRAVNISDS NMTLTWKSNN NESHASFTYK IYVAGGSDSI NETVNETQAV 300
  301 IRGLSSSTLY NITVLPFLGQ TAGIPGFLQV YTSPRPVSDF RVTNVSLREI GLAWRSNDSE 360
  361 SFEIFITQEG SEKRWNASTG DLSYIVVNLK PGTSYQFEIF PRGPNGTEGP SQTVVGRTDC 420
  421 SAVTDIRVVS VSTTEIQLEW QNTDSASGYT YHLVLESENG SIKTNSSQKW ITVGGLTPGT 480
  481 LYNVTIFPEV DQMEGNSSSI TQYTRPSNVS YIEVNTNTTV GAIQWKNLDA ASASYSYSVL 540
  541 ILKAGDGSNV TSRVRDIPSV TIPGLIPGVS SEVKIFTKIR NTEVGNEVPG QKLFCMEPAQ 600
  601 VDSLHCEVVP KEPALVLKWA CPPGMNSGFE LGVRSDAWDN MTHLENCTLD NDTECRTEVT 660
  661 YLNFSTSYNI SIATLSCGKM ALPTQSTCTT GITDPPPPDG SPNITSVSHN SVKVKFSGFE 720
  721 ASHGPIKAYA VLLTTGEAGQ PSTDVLKYTY EDFKKGASDT YVTYLIRIEE KGQSQGLSEA 780
  781 LNYEIDVGNQ STTLGYYNGR LEPLGSYRAC VAGFTNITYN LQNDGLINGD ESYVSFSPYS 840
  841 EAVSLPQDPG VICGAVFGCI FGALAIVAVG GFIFWRKKRK DAKNNEVSFS QIKPKKSKLI 900
  901 RVENFEAYFK KQQADSNCGF AEEYEDLKLI GISLPKYAAE IAENRGKNRY NNVLPYDISR 960
  961 VKLSVQTHST DDYINANYMP GYHSKKDFIA TQGPLPNTLK DFWRMVWEKN VYAIVMLTKC1020
 1021 VEQGRTKCEE YWPSKQAQDY GDITVAMTSE VVLPEWTIRD FVVKNMQSSE SHPLRQFHFT1080
 1081 SWPDHGVPDT TDLLINFRYL VRDYMKQIPP ESPILVHCSA GVGRTGTFIA IDRLIYQIEN1140
 1141 ENTVDVYGIV YDLRMHRPLM VQTEDQYVFL NQCVLDIIRA QKDSKVDLIY QNTTAMTIYE1200
 1201 NLERVSMFGK ANGYIA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle