YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109466595, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.99
Transmembrane Helix	44	65	0.90
Non-Cytoplasmic	66	78	0.73
Transmembrane Helix	79	98	0.93
Cytoplasmic	99	121	0.68
Transmembrane Helix	122	150	0.56
Non-Cytoplasmic	151	162	0.82
Transmembrane Helix	163	184	0.88
Cytoplasmic	185	193	0.73
Transmembrane Helix	194	214	0.92
Non-Cytoplasmic	215	233	0.85
Transmembrane Helix	234	255	0.88
Cytoplasmic	256	265	0.86
Transmembrane Helix	266	288	0.87
Non-Cytoplasmic	289	320	0.85
Transmembrane Helix	321	343	0.92
Cytoplasmic	344	362	0.90
Transmembrane Helix	363	383	0.88
Non-Cytoplasmic	384	392	0.72
Transmembrane Helix	393	412	0.93
Cytoplasmic	413	422	0.89
Transmembrane Helix	423	443	0.94
Non-Cytoplasmic	444	449	0.78
Transmembrane Helix	450	470	0.93
Cytoplasmic	471	502	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRKPVVATI SKGGYLQGNV SGRLPSVGDQ EPPGHEKVVL KKKITLLRGV SIIIGTVIGS  60
   61 GIFISPKGIL QNTGSVGMSL VFWSACGVLS LFGALSYAEL GTSIKKSGGH YTYILEVFGP 120
  121 LLAFVRVWVE LLVIRPGATA VISLAFGRYI LEPFFIQCEI PELAIKLVTA VGITVVMVLN 180
  181 STSVSWSARI QIFLTFCKLT AILIIIVPGV IQLIKGQTHH FKDAFSGRDT NLMGLPLAFY 240
  241 YGMYAYAGWF YLNFITEEVD NPEKTIPLAI CISMAIITVG YVLTNVAYFT TISAEELLQS 300
  301 SAVAVTFSER LLGKFSLAVP IFVALSCFGS MNGGVFAVSR LFYVASREGH LPEILSMIHV 360
  361 HKHTPLPAVI VLHPLTMIML FSGDLYSLLN FLSFARWLFM GLAVAGLIYL RYKRPDMHRP 420
  421 FKVPLFIPAL FSFTCLFMVV LSLYSDPFST GVGFLITLTG VPAYYLFIVW DKKPKWFRRL 480
  481 SDRITRTLQI ILEVVPEDSK EL