YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62641509, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRNLFRRRL FSYPTKYYFM VLVLSLITFS VVRIHQKPEF VSVSHLELSG DDPNSNVNCT  60
   61 KVLQGDPEEI QKVKLEILTV QFKKRPRRTP HDYINMTRDC ASFIRTRKYI MEPLTKEEVG 120
  121 FPIAYSIVVH HKIDMLDRLL RAIYMPQNFY CIHVDRKAEE SFLAAVQGIA SCFDNVFVAS 180
  181 QLESVVYASW SRVKADLNCM KDLYRMNANW KYLINLCGMD FPIKTNLEIV RKLKSFTGEN 240
  241 SLETEKMPPN KEERWKKRYT VVDGKLTNTG VVKAQPPLKT PLFSGSAYFV VTREYVGYVL 300
  301 ENKNIQKFME WAQDTYSPDE FLWATIQRIP EVPGSLPSSH KYDLSDMNAV ARFVKWQYFE 360
  361 GDVSNGAPYP PCSGVHVRSV CVFGVGDLSW MLRKHHFFAN KFDMDVDPFA LQCLEEHLRH 420
  421 KALETLER

Type	Start	End	Confidence
Cytoplasmic	1	15	0.77
Transmembrane Helix	16	35	0.78
Non-Cytoplasmic	36	428	0.99