YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3868786
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSYSERLGG PAVSPLPVRG RHMVHGAAFA YVPSPQVLHR IPGTTTYAIS SLSPVALTEH  60
   61 SCPYGEVLEC HDPLPAKLAQ EEEQKPEPRL SQKLAQVGTK LLKVPLMLGF LYLFVCSLDV 120
  121 LSSAFQLAGG KVAGDIFKDN AILSNPVAGL VVGILVTVLV QSSSTSTSII VSMVSFGLLE 180
  181 VSSAIPIIMG SNIGTSVTNT IVALMQAGDR TDFRRAFAGA TVHDCFNWLS VLVLLPLEAA 240
  241 TGYLHHVTGL VVASFNIRGG RDAPDLLKVI TEPFTKLIIQ LDKSVITSIA VGDESLRNHS 300
  301 LIRIWCQPET KEVSSEPGKT IPSLEVCLFV PETLDIT

Type	Start	End	Confidence
Cytoplasmic	1	105	0.87
Transmembrane Helix	106	128	0.82
Non-Cytoplasmic	129	140	0.77
Transmembrane Helix	141	160	0.87
Cytoplasmic	161	168	0.58
Transmembrane Helix	169	190	0.76
Non-Cytoplasmic	191	238	0.64
Transmembrane Helix	239	253	0.47
Cytoplasmic	254	337	0.64