YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT4R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLDANVSS NEGFGSVEKV VLLTFFAMVI LMAILGNLLV MVAVCRDRQL RKIKTNYFIV  60
   61 SLAFADLLVS VLVNAFGAIE LVQDIWFYGE MFCLVRTSLD VLLTTASIFH LCCISLDRYY 120
  121 AICCQPLVYR NKMTPLRIAL MLGGCWVIPM FISFLPIMQG WNNIGIVDVI EKRKFNHNSN 180
  181 STFCVFMVNK PYAITCSVVA FYIPFLLMVL AYYRIYVTAK EHAQQIQMLQ RAGATSESRP 240
  241 QTADQHSTHR MRTETKAAKT LCVIMGCFCF CWAPFFVTNI VDPFIDYTVP EKVWTAFLWL 300
  301 GYINSGLNPF LYAFLNKSFR RAFLIILCCD DERYKRPPIL GQTVPCSTTT INGSTHVLRD 360
  361 TVECGGQWES RCHLTATSPL VAAQPVIRRP QDNDLEDSCS LKRSQS

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.97
Transmembrane Helix	21	45	0.90
Cytoplasmic	46	56	0.91
Transmembrane Helix	57	79	0.92
Non-Cytoplasmic	80	98	0.81
Transmembrane Helix	99	120	0.82
Cytoplasmic	121	135	0.89
Transmembrane Helix	136	157	0.91
Non-Cytoplasmic	158	191	0.95
Transmembrane Helix	192	213	0.92
Cytoplasmic	214	256	0.96
Transmembrane Helix	257	278	0.90
Non-Cytoplasmic	279	294	0.88
Transmembrane Helix	295	315	0.93
Cytoplasmic	316	406	0.99