YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11464989, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVVKTCVTC TMYLGILFSV LAYLLSDAVP VKRQAYFNST AYLPCPFTKA QNISPSELVV  60
   61 FWQDRKKSVL YEHYLGAEKL DNVNAKYLGR TSFDRDNQAL RLHNVQIKDT GLYDCFIQQK 120
  121 TPTGSIILQQ WETELSVIAN FSEPEIEEAQ NETRNTGINL TCSSKQGYPK PTKMYFLITN 180
  181 STNEYGDNMQ ISQDNVTKLF SVSISLSLPF PDGVYNMTIV CILETESMNI SSKPHNMVFS 240
  241 QPQFDRKTWI QIAGPSSLLC CLFLLVVYKA VKKCLKMQNQ PGRPSRKTCE SKQDSGVDES 300
  301 INLEEVEPQL HQQ

Type	Start	End	Confidence
Signal Peptide	1	22	0.79
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	248	0.98
Transmembrane Helix	249	268	0.85
Cytoplasmic	269	313	0.85