YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NMBR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRSLPNLS LPTEASESEL EPEVWENDFL PDSDGTTAEL VIRCVIPSLY LIIISVGLLG  60
   61 NIMLVKIFLT NSTMRSVPNI FISNLAAGDL LLLLTCVPVD ASRYFFDEWV FGKLGCKLIP 120
  121 AIQLTSVGVS VFTLTALSAD RYRAIVNPMD MQTSGVVLWT SLKAVGIWVV SVLLAVPEAV 180
  181 FSEVARIGSS DNSSFTACIP YPQTDELHPK IHSVLIFLVY FLIPLVIISI YYYHIAKTLI 240
  241 RSAHNLPGEY NEHTKKQMET RKRLAKIVLV FVGCFVFCWF PNHILYLYRS FNYKEIDPSL 300
  301 GHMIVTLVAR VLSFSNSCVN PFALYLLSES FRKHFNSQLC CGQKSYPERS TSYLLSSSAV 360
  361 RMTSLKSNAK NVVTNSVLLN GHSTKQEIAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.76
Transmembrane Helix	46	69	0.84
Cytoplasmic	70	79	0.68
Transmembrane Helix	80	101	0.77
Non-Cytoplasmic	102	118	0.82
Transmembrane Helix	119	139	0.88
Cytoplasmic	140	155	0.88
Transmembrane Helix	156	177	0.86
Non-Cytoplasmic	178	210	0.93
Transmembrane Helix	211	235	0.87
Cytoplasmic	236	263	0.98
Transmembrane Helix	264	285	0.91
Non-Cytoplasmic	286	305	0.84
Transmembrane Helix	306	327	0.82
Cytoplasmic	328	390	0.90