YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40438
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLHLLFLF LINQTLTINV LVLSPAFGGS HMNFMAHLAD TLTEAGHNVT FLIPVADETR  60
   61 KNQLGVKITK DVVLVEQDEI MSRDTLIVDD HMDMMWTLDT HEPNFEEMFS WFNKIMELSC 120
  121 ANFLRNTEVF ELMKSRNFDV AILEPLSVCG LGFFKKLGIE KTILASSCSL YDFILPDIGE 180
  181 PEDHSYVPSL SSQSGDQMSF YERYKNYRFS RVTVLPKVCM YYLFNFLGHK VIQKTVAIGG 240
  241 ISVNMGKIKS QKLDDHWDVI LDQRNNNMLI SFGSMVKSST MPIDWKMNIL KVIKSEPNVT 300
  301 FIWKYETNDT KFADGVDNVH FSKWVPQTAL LNDDRLTAFL THGGLGSTNE LAHWGKPAVT 360
  361 VPIFGDQVRN ANMLTRHNGA IFVWKNDLGN YGIVKEAVHQ ILYNEKYKRN AKYLADILEN 420
  421 QPHQPKDLVV KHTEFLAKFG PFPKMDPYGR SLNFFTRNLF DIHAAVVFTY FILATASFNI 480
  481 LKFLLSKFSI KLVKKAKKDL

Type	Start	End	Confidence
Signal Peptide	1	28	0.70
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	461	0.99
Transmembrane Helix	462	485	0.88
Cytoplasmic	486	500	0.96