YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO1B2_RAT, S1B2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.87
Transmembrane Helix	26	45	0.79
Non-Cytoplasmic	46	66	0.71
Transmembrane Helix	67	88	0.87
Cytoplasmic	89	95	0.75
Transmembrane Helix	96	117	0.92
Non-Cytoplasmic	118	174	0.77
Transmembrane Helix	175	193	0.73
Cytoplasmic	194	205	0.86
Transmembrane Helix	206	231	0.84
Non-Cytoplasmic	232	253	0.93
Transmembrane Helix	254	276	0.93
Cytoplasmic	277	333	0.96
Transmembrane Helix	334	356	0.91
Non-Cytoplasmic	357	372	0.87
Transmembrane Helix	373	394	0.92
Cytoplasmic	395	494	0.97
Transmembrane Helix	495	518	0.86
Non-Cytoplasmic	519	531	0.84
Transmembrane Helix	532	553	0.85
Cytoplasmic	554	652	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHTQQSRKA AEAQPSRSKQ TRFCDGFKLF LAALSFSYIC KALGGVVMKS SITQIERRFD  60
   61 IPSSISGLID GGFEIGNLLV IVFVSYFGSK LHRPKLIGIG CFIMGIGSIL TALPHFFMGY 120
  121 YKYAKENDIG SLGNSTLTCF INQMTSPTGP SPEIVEKGCE KGLKSHMWIY VLMGNMLRGI 180
  181 GETPIVPLGI SYLDDFAKEG HTSMHLGTLH TIAMIGPILG FIMSSVFAKI YVDVGYVDLN 240
  241 SVRITPNDAR WVGAWWLSFI VNGLLCITSS IPFFFLPKIP KRSQEERKNS VSLHAPKTDE 300
  301 EKKHMTNLTK QEEQDPSNMT GFLRSLRSIL TNEIYVIFLI LTLLQVSGFI GSFTYLFKFI 360
  361 EQQFGRTASQ ANFLLGIITI PTMATAMFLG GYIVKKFKLT SVGIAKMNPV DSHIDVPLSY 420
  421 CNSDCSCDKN QWEPICGENG VTYISPCLAG CKSFRGDKKP NNTEFYDCSC ISNSGNNSAH 480
  481 LGECPRYKCK TNYYFYIILQ VTVSFFTAMG SPSLILILMK SVQPELKSLA MGFHSLIIRA 540
  541 LGGILAPIYY GAFIDRTCIK WSVTSCGKRG ACRLYNSRLF GFSYLGLNLA LKTPPLFLYV 600
  601 VLIYFTKRKY KRNDNKTLEN GRQFTDEGNP DSVNKNGYYC VPYDEQSNET PL