YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FOXA1_RAT
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTVKMEGH ESNDWNSYYA DTQEAYSSVP VSNMNSGLGS MNSMNTYMTM NTMTTSGNMT  60
   61 PASFNMSYAN PGLGAGLSPG AVAGMPGGSA GAMNSMTAAG VTAMGAALSP GGMGSMGAQP 120
  121 AASMNGLGPY AAAMNPCMSP MAYAPSNLGR SRAGGGGDAK TFKRSYPHAK PPYSYISLIT 180
  181 MAIQQAPSKM LTLSEIYQWI MDLFPYYRQN QQRWQNSIRH SLSFNACFVK VARSPDKPGK 240
  241 GSYWTLHPDS GNMFENGCYL RRQKRFKCEK QPGAGGGSGG GGSKGVPENR KDPSGPVNPS 300
  301 AESPIHRGVH GKASQLEGAP APGPAASPQT LDHSGATATG GGSELKSPAS SSAPPISSGP 360
  361 GGWICTPLSP TWLAPHESQL HLKGAPHYSF NHPFSINNLM SSSEQQHKLD FKAYEQALQY 420
  421 SPYGATLPAS LPLGGASVAT RSPIEPSALE PAYYQGVYSR PVLNTS

Type	Start	End	Confidence
Cytoplasmic	1	67	0.63
Transmembrane Helix	68	85	0.48
Non-Cytoplasmic	86	95	0.47
Transmembrane Helix	96	117	0.62
Cytoplasmic	118	125	0.39
Transmembrane Helix	126	144	0.41
Non-Cytoplasmic	145	466	0.63