YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148672777, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSIKNVLYF QAGFGVLANL FLVCFYIYII LGHRRKPTDL ISCQLTFVHI IMFLTGGDIW  60
   61 LTDFFELLNI ENDIKCKATF YISRVMRSLS MCTTCLLSVF QAVTICPSTT LLAKFKHKLK 120
  121 KYMIYAFLCM WSFNLSFNSN QIFFVGAYTN VSETKQMKAT KYCSLLPMNN IIRGLILTVT 180
  181 TSRDVFLIGV MLTTSTYMVI ILSRHQRQCK HLHSISHMRA SPEKRATQTI LLLVFFFVVM 240
  241 YWVDLIISMT SFLLWRYDPV ILTVQKFLMN AYPTITPLVQ FSSDNRIIIM LKNLQSKHHH 300
  301 MYFKKYVFTL LYKTY

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	39	0.86
Transmembrane Helix	40	61	0.89
Non-Cytoplasmic	62	88	0.92
Transmembrane Helix	89	112	0.86
Cytoplasmic	113	121	0.88
Transmembrane Helix	122	144	0.85
Non-Cytoplasmic	145	184	0.93
Transmembrane Helix	185	205	0.91
Cytoplasmic	206	225	0.96
Transmembrane Helix	226	246	0.91
Non-Cytoplasmic	247	315	0.74