YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOT4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.95
Transmembrane Helix	19	39	0.93
Non-Cytoplasmic	40	59	0.84
Transmembrane Helix	60	78	0.91
Cytoplasmic	79	88	0.64
Transmembrane Helix	89	108	0.90
Non-Cytoplasmic	109	113	0.61
Transmembrane Helix	114	135	0.85
Cytoplasmic	136	146	0.83
Transmembrane Helix	147	169	0.89
Non-Cytoplasmic	170	177	0.78
Transmembrane Helix	178	197	0.94
Cytoplasmic	198	230	0.93
Transmembrane Helix	231	253	0.91
Non-Cytoplasmic	254	266	0.82
Transmembrane Helix	267	286	0.91
Cytoplasmic	287	296	0.79
Transmembrane Helix	297	316	0.91
Non-Cytoplasmic	317	323	0.74
Transmembrane Helix	324	344	0.92
Cytoplasmic	345	355	0.76
Transmembrane Helix	356	375	0.91
Non-Cytoplasmic	376	390	0.83
Transmembrane Helix	391	414	0.91
Cytoplasmic	415	471	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGAVVDEGP TGIKAPDGGW GWAVLFGCFI ITGFSYAFPK AVSVFFKELM HEFGIGYSDT  60
   61 AWISSILLAM LYGTGPLCSM CVNRFGCRPV MLVGGLFASL GMVAASFCRS IIQIYLTTGV 120
  121 ITGLGLALNF QPSLIMLNRY FNKRRPMANG LAAAGSPVFL CALSPLGQLL QDHYGWRGGF 180
  181 LILGGLLLNC CVCAALMRPL VAPQASGGAE PHGPQRPSPR LLDLSVFRDR GFLIYAVAAS 240
  241 IMVLGLFVPP VFVVSYAKDM GVPDTKAAFL LTILGFIDIF ARPTAGFITG LKKVRPYSVY 300
  301 LFSFAMFFNG FTDLTGSTAS DYGGLVVFCI FFGISYGMVG ALQFEVLMAI VGTQKFSSAI 360
  361 GLVLLLEAVA VLIGPPSGGK LLDATKVYKY VFILAGAEVL TSSLVLLLGN FFCIGKRKRP 420
  421 EVTKPEEVAS EEEKLHKPPV DVRVDSREVE HFLKAEPEKN GEVVHTPETS V